Publications

2016

Ray A, Kambali M, Ravindranath V, (2016), Thiol Oxidation by Diamide Leads to Dopaminergic Degeneration and Parkinsonism Phenotype in Mice: A Model for Parkinson’s Disease, Antioxid Redox Signal, 10;25(5):, 252-67

Ahmad F, Singh K, Das D, Gowaikar R, Shaw E, Ramachandran A, Rupanagudi KV, Kommaddi RP, Bennett DA, Ravindranath V, (2017), ROS-mediated loss of synaptic Akt1 signaling leads to deficient activity-dependent protein translation early in Alzheimer’s disease, Antioxid Redox Signal

Pouget P., Murthy A. and Stuphorn V., (2017), Cortical control and performance monitoring of interrupting and redirecting movements, Philosophical Transactions of the Royal Soc.(B)

Bhutani N, Sengupta S, Basu D, Prabhu N. G, Murthy A., (2017), Parallel activation of prospective motor plans during visually-guided sequential saccades., Eur J Neurosci, , 45, 631-642

Jana S, Atul Gopal P.A, Murthy A., (2017), Evidence of common and separate eye and hand accumulators underlying flexible eye-hand coordination, Journal of Neurophysiology, jn.117(1):, 348-364

I Izeddin, J Boulanger, V Racine, CG Specht, A Kechkar, D Nair, A Triller, D Choquet, M Dahan, JB Sibarita, (2012), Wavelet analysis for single molecule localization microscopy, Optics express, 20, 2081-2095

Olivier Rossier, Vivien Octeau, Jean-Baptiste Sibarita, Cecile Leduc, Béatrice Tessier, Deepak Nair, Volker Gatterdam, Olivier Destaing, Corinne Albiges-Rizo, Robert Tampé, Laurent Cognet, Daniel Choquet, Brahim Lounis, Gregory Giannone, (2012), Integrins β1 and β3 exhibit distinct dynamic nanoscale organizations inside focal adhesions, Nature cell biology, 14, , 1057-1067

Nathanael Hoze, Deepak Nair, Eric Hosy, Christian Sieben, Suliana Manley, Andreas Herrmann, Jean-Baptiste Sibarita, Daniel Choquet, David Holcman, (2012), Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging, Proceedings of the National Academy of Sciences, 109, 17052-17057

Meike Heidbreder, Christin Zander, Sebastian Malkusch, Darius Widera, Barbara Kaltschmidt, Christian Kaltschmidt, Deepak Nair, Daniel Choquet, Jean-Baptiste Sibarita, Mike Heilemann, (2012), TNF-α influences the lateral dynamics of TNF receptor I in living cells, Biochimica et Biophysica Acta (BBA)-Molecular Cell Research, 1823, 1984-1989

Mini Jose, Sylvain Tollis, Deepak Nair, Jean-Baptiste Sibarita, Derek McCusker, (2013), Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism, J Cell Biol, 407-418, jcb. 201206081

Adel Kechkar, Deepak Nair, Mike Heilemann, Daniel Choquet, Jean-Baptiste Sibarita, (2013), Real-time analysis and visualization for single-molecule based super-resolution microscopy, PLoS One, 8, e62918

Deepak Nair, Eric Hosy, Jennifer D Petersen, Audrey Constals, Gregory Giannone, Daniel Choquet, Jean-Baptiste Sibarita, (2013), Super-resolution imaging reveals that AMPA receptors inside synapses are dynamically organized in nanodomains regulated by PSD95, Journal of Neuroscience, 33 , 13204-13224

Vincent Fraisier, Amal Kasri, Stéphanie Miserey-Lenkei, Jean-Baptiste Sibarita, Deepak Nair, Adeline Mayeux, Sabine Bardin, Yusuke Toyoda, Ina Poser, Andrei Poznyakovskiy, Bruno Goud, Anthony A Hyman, Ariane Dimitrov, (2013), C11ORF24 is a novel type I membrane protein that cycles between the Golgi apparatus and the plasma membrane in Rab6-positive vesicles, Public Library of Science, doi:10.1371, 8, e82223

Anaël Chazeau, Amine Mehidi, Deepak Nair, Jérémie J Gautier, Cécile Leduc, Ingrid Chamma, Frieda Kage, Adel Kechkar, Olivier Thoumine, Klemens Rottner, Daniel Choquet, Alexis Gautreau, Jean‐Baptiste Sibarita, Grégory Giannone, (2014), Nanoscale segregation of actin nucleation and elongation factors determines dendritic spine protrusion, The EMBO journal, 33, 2745-2764

Mini Jose, Sylvain Tollis, Deepak Nair, Romain Mitteau, Christophe Velours, Aurelie Massoni-Laporte, Anne Royou, Jean-Baptiste Sibarita, Derek McCusker, (2015), A quantitative imaging-based screen reveals the exocyst as a network hub connecting endocytosis and exocytosis, Molecular biology of the cell, 26, 2519-2534

Callista B Harper, Andreas Papadopulos, Sally Martin, Daniel R Matthews, Garry P Morgan, Tam H Nguyen, Tong Wang, Deepak Nair, Daniel Choquet, Frederic A Meunier, (2016), Botulinum neurotoxin type-A enters a non-recycling pool of synaptic vesicles, Scientific reports, Sci Rep 6, , srep19654

Darius Widera, Christin Klenke, Deepak Nair, Meike Heidbreder, Sebastian Malkusch, Jean-Baptiste Sibarita, Daniel Choquet, Barbara Kaltschmidt, Mike Heilemann, Christian Kaltschmidt, (2016), Single-particle tracking uncovers dynamics of glutamate-induced retrograde transport of NF-κB p65 in living neurons, Neurophotonics, 3, 041804-041804

Aditya Singh, Suraj Kumar, Vikram Pal Singh, Asish Das, Balaji J, (2017), Flavor Dependent Retention of Remote Food Preference Memory, Front. Behav. Neurosci. doi: 10.3389/fnbeh.2017.00007, 11, 7

S Maiti, SK Kaushalya, K Garai, J Balaji, (2010), Fluorescence correlation microscopy with real-time alignment readout, US Patent, 7,705,987

BJ Wiltgen, M Zhou, Y Cai, J Balaji, MG Karlsson, SN Parivash, W Li, (2010), The hippocampus plays a selective role in the retrieval of detailed contextual memories, Current Biology, 1336-1344

B Sarkar, AK Das, S Arumugam, SK Kaushalya, A Bandyopadhyay, Balaji J, Maiti S., (2012), The dynamics of somatic exocytosis in monoaminergic neurons, Frontiers in physiology, 414

A Singh, S Kumar, VP Singh, J Balaji, (2013), Optical microscopy methods for understanding learning and memory, CURRENT SCIENCE, 1537-1548

M Zhou, W Li, S Huang, J Song, JY Kim, X Tian, E Kang, Y Sano, C Liu, (2013), mTOR Inhibition ameliorates cognitive and affective deficits caused by Disc1 knockdown in adult-born dentate granule neurons, Neuron, 647-654

R Czajkowski, B Jayaprakash, B Wiltgen, T Rogerson, (2014), Encoding and storage of spatial information in the retrosplenial cortex, Proceedings of the National Academy of Sciences, 8661-8666

YS Lee, D Ehninger, M Zhou, JY Oh, M Kang, C Kwak, HH Ryu, D Butz, (2014), Mechanism and treatment for learning and memory deficits in mouse models of Noonan syndrome, Nature neuroscience, 1736-1743

HJ Singh, VR Singh, SK Sikdar, B Jayaprakash, A Ghosh, (2016), Circular Differential Two-Photon Luminescence from Helically Arranged Plasmonic Nanoparticles, ACS Photonics, 863-868

T Rogerson, B Jayaprakash, DJ Cai, Y Sano, YS Lee, Y Zhou, P Bekal,, (2016), Molecular and Cellular Mechanisms for Trapping and Activating Emotional Memories, PloS one, e0161655

S Kumar, A Singh, VR Singh, JB George, J Balaji, (2016), Saturation Dynamics Measures Absolute Cross Section and Generates Contrast within a Neuron, Biophysical Journal, 1328-1336

Sripati AP & Olson CR, (2010), Global image similarity in monkey inferotemporal cortex predicts human visual search performance, Journal of Neuroscience, 1258-69

Sripati AP & Olson CR, (2010), Responses to compound objects in monkey inferotemporal cortex: The whole is equal to the sum of discrete parts, Journal of Neuroscience, 7948-60

Kim SS, Sripati AP & Bensmaia SJ, (2010), Predicting the timing of spikes evoked by tactile stimulation of the hand. Journal of Neurophysiology, Journal of Neurophysiology, 1484-96

Arun SP, (2012), Turning visual search time on its head, Vision Research, 86-92

Vaidhiyan N, Arun SP & Sundaresan R, (2012), Active sequential hypothesis testing with application to a visual search problem, Proceedings of the 2012 IEEE Symposium on Information Theory, Cambridge MA

Mohan K & Arun SP, (2012), Similarity relations in visual search predict rapid visual categorization, Journal of Vision, 19

Vighneshvel T & Arun SP, (2013), Does linear separability really matter? Complex search is explained by simple search, Journal of Vision, 1-24

Pramod RT & Arun SP, (2014), Features in visual search combine linearly, Journal of Vision, 1-20

Zhivago KA & Arun SP, (2014), Texture discriminability in monkey inferotemporal cortex predicts human texture perception, Journal of Neurophysiology, 112: 2745-55

Vighneshvel T & Arun SP, (2015), Coding of relative size in monkey inferotemporal cortex, Journal of Neurophysiology, 113: 2173-79

Ratan Murty NA & Arun SP, (2015), Dynamics of 3d view invariance in monkey inferotemporal cortex, Journal of Neurophysiology, 113: 2180-94

Zhivago KA & Arun SP, (2016), Selective IT neurons are selective along many dimensions, Journal of Neurophysiology, 115: 1512-1520

Pramod RT & Arun SP, (2016), Object attributes combine additively in visual search, Journal of Vision, 1-29

Pramod RT & Arun SP, (2016), Do computational models differ systematically from human object perception?, CVPR

Puneeth NC & Arun SP, (2016), A neural substrate for object permanence in monkey inferotemporal cortex, Scientific Reports, 6:30808

Ratan Murty NA & Arun SP, (2016), Seeing a straight line on a curved surface: Decoupling of patterns from surfaces by single IT neurons, Journal of Neurophysiology

Sunder S & Arun SP, (2016), Look before you seek: Preview adds a fixed benefit to all searches, Journal of Vision, 1-17

Deshmukh SS, Yoganarasimha D, Voicu H, Knierim JJ, (2010), Theta modulation in the medial and the lateral entorhinal cortices, J. Neurophysiol, 104:994-1006

Deshmukh SS, Knierim JJ, (2012), Representation of non-spatial and spatial information in the lateral entorhinal cortex, Front. Behav. Neurosci. 5:69, doi: 10.3389/fnbeh.2011.00069

Deshmukh SS, Knierim JJ, Derdikman D, (2012), Spatial and nonspatial representations in the lateral entorhinal cortex. In Space, Time, and Memory in the Hippocampal Formation, Hippocampus, 3:231-251

Deshmukh SS*#, Johnson JL*, Knierim JJ, (2012), Perirhinal cortex represents nonspatial, but not spatial, information in rats foraging in the presence of objects: Comparison with lateral entorhinal cortex, Hippocampus. 22:2045-2058. (* equal first-author, # corresponding author)

Deshmukh SS#, Knierim, JJ, (2013), Influence of local objects on hippocampal representations: landmark vectors and memory, Hippocampus. 23:253-267*. (# corresponding author; * pictured on the cover of the April 2013 issue of Hippocampus).

Knierim JJ, Neurnuebel JP, Deshmukh SS, (2014), Functional correlates of the lateral and medial entorhinal cortex: Objects, path integration, and local-global reference frames, Phil. Trans. Roy. Soc. B. Biol. Sci. 369 20130369, doi:10.1098/rstb.2013.0369

Deshmukh SS, (2014), Spatial and nonspatial representations in the lateral entorhinal cortex, In: Space, Time and Memory in the Hippocampal Formation, Springer, Vienna, 127-152

Jose M., Tollis S., Nair D.K., Sibarita J.B., McCusker D, (2013), Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism, J Cell Biol, 200(4): 407-18

Jose M., Tollis S., Nair D.K., Mitteau R, Velours C, Massoni-Laporte A, Rouyou A, Sibarita J.B., McCusker D, (2015), A quantitative imaging-based screen reveals the exocyst as a network hub connecting endocytosis and exocytosis, Mol Biol Cell, 26(13):2519-34.

Ceni C, Kommaddi RP, Thomas R, Vereker E, Liu X, McPherson PS, Ritter B, Barker PA, (2010), The p75NTR intracellular domain generated by neurotrophin-induced receptor cleavage potentiates Trk signaling, J Cell Sci, 123(Pt13):2299-307. PMID: 20530577

Kommaddi RP, Dickson KM, Barker PA, (2011), Stress-induced expression of the p75neurotrophin receptor is regulated by O-GlcNAcylation of the Sp1 transcription factor, J Neurochem, 116(3):396-405. PMID: 21105874

Kommaddi RP, Thomas R, Ceni C, Daigneault K, Barker PA, (2011), Trk-dependent ADAM17 activation facilitates neurotrophin survival signaling, FASEB J, 25(6):2061-70. PMID: 21411748

Kommaddi RP, Shenoy SK, (2013), Arrestins and protein ubiquitination. Prog Mol Biol Transl Sci, 118:175-204. Review. PubMed PMID: 23764054.

Han SO, Kommaddi RP, Shenoy SK, (2013), Distinct roles for beta-arrestin2 and arrestin-domain-containing proteins in beta2 adrenergic receptor trafficking, EMBO Rep, 14(2):164-71. PMID: 23208550

Kommaddi RP, Jean-Charles PY, Shenoy SK.,, (2015), Phosphorylation of the deubiquitinase USP20 by protein kinase A regulates post-endocytic trafficking of beta2 adrenergic receptors to autophagosomes during physiological stress, J Biol Chem, 290(14):8888-903

Sridharan D,Boahen K, Knudsen EI, (2011), Space coding by gamma oscillations in the barn owl optic tectum, Journal of Neurophysiology, 105: 2005-2017

Goddard CA , Sridharan D , Huguenard JH, Knudsen EI, (2012), Gamma oscillations are generated locally in an attention-related midbrain network, Neuron , 73(3):567-80

Sridharan D ,Ramamurthy DL, Knudsen EI, (2013), Spatial probability dynamically modulates visual target detection in chickens, Plos One, 8(5): e64136

Schwarz JS,Sridharan D, (2013), Magnetic tracking of eye position in freely behaving chickens, Knudsen EIFrontiers in Systems Neuroscience , 7(91):1-8

Sridharan D , Ramamurthy DL, Schwarz JS, Knudsen EI, (2014), Visuospatial selective attention in chickens, Proceedings of the National Academy of Sciences, 111(19): E2056-2065

Sridharan D , Schwarz JS, Knudsen EI, (2014), Selective attention in birds, Current Biology, 24(11): R510-513

Sridharan D , Steinmetz NA, Moore T, Knudsen EI, (2014), Distinguishing bias from sensitivity effects in multialternative detection tasks, Journal of Vision , 14(9):16, 1-32

Saeed U, Ray A, Valli RK, Kumar AM, Ravindranath V, (2010), DJ-1 Loss by Glutaredoxin But Not Glutathione Depletion Triggers Daxx Translocation and Cell Death.Antioxid Redox Signal

Sehgal N., Gupta, A., Khader Valli, R., Shanker Datt Joshi, Jessica T. Mills, Edith Hamel, Khanna, P., Jain, S. C., Thakur, S.S. and Ravindranath V, (2012), Withania somnifera reverses Alzheimer’s disease pathology by enhancing low-density lipoprotein receptor-related protein in liver, Proc. Natl. Acad. Sci, USA 109: 3510-5

Ahmad F, Nidadavolu P, Durgadoss L, Ravindranath V., (2014), Critical cysteines in Akt1 regulate its activity and proteasomal degradation: implications for neurodegenerative diseases, Free Radic Biol Med, 74:118-28

Ray A, Sehgal N, Karunakaran S, Rangarajan G, Ravindranath V, (2015), MPTP activates ASK1-p38 MAPK signaling pathway through TNF-dependent Trx1 oxidation in parkinsonism mouse model, Free Radic Biol Med, 87:312-25

Li CL, Sathyamurthy A, Oldenborg A, Tank D and*Ramanan N *, (2014), Glycogen synthase kinase-dependent axon growth is mediated by SRF-dependent transcription in CNS neurons, J Neurosci, 34 (11): 4027-4042

Lu PPY and Ramanan N, (2012), A critical cell-intrinsic role for serum response factor in glial specification in the CNS, J. Neurosci. 32: 8012-23, PMID: 22674276

Lin C, Hinde A, Burns CJ, Yin Y, Koppel A, Ma L, Blumenberg M, Khnykin D, Jahnsen FL, Crosby SD, Ramanan N, and Efimova T, (2012), Serum Response Factor controls transcriptional network regulating epidermal function and hair follicle morphogenesis, J. Invest. Dermatol. 133: 608-617, PMID: 23151848

Lu PPY and Ramanan N, (2011), Serum Response Factor is required for cortical axon growth but is dispensable for neurogenesis and neocortical lamination, J. Neurosci. 31:16651-64, PMID: 22090492

Johnson AW, Rombag HS, Smith DR and Ramanan N, (2011), Effects of serum response factor (SRF) deletion on conditioned reinforcement, Behav Brain Res. 220:312-8, PMID: 21329726

Ramakrishnan A, Chokhandre S, Murthy A., (2010), Voluntary control of multi-saccade gaze shifts during movement preparation and execution, J. Neurophysiology, 103:2400-16

Farooqui AA, Bhutani N, Kulashekhar S, Behari M, Goel V, Murthy A., (2011), Impaired conflict monitoring in Parkinson’s disease patients during an oculomotor redirect task, Exp Brain Res., 208(1):1-10.

Ray S., Bhutani N., V. Kapoor and Murthy A., (2011), Trans-saccadic integration of visual and motor processing during sequential eye movements., Experimental Brain Research, 215:13-25

Ramakrishnan, A., Sureshbabu Ramakrishnan and Murthy A., (2012), Understanding how the brain changes its mind: microstimulation in the macaque frontal eye field reveals how saccade plans are changed., Journal of Neuroscience., 32(13):4457- 4472

Ray S., Bhutani N and Murthy A., (2012), Mutual inhibition and capacity sharing during parallel preparation of serial eye movements., Journal of Vision., 12(3)17:1-22

Bhutani N, Ray S, and Murthy A., (2012), Is saccade averaging determined by visual processing or movement planning?, J. Neurophysiology., 108: 3161-3171

Ray S and Maunsell JHR, (2010), Differences in gamma frequencies across visual cortex restrict their possible use in computation, Neuron, 67:885-896

Ray S and Maunsell JHR, (2011), Different origins of gamma rhythm and high-gamma activity in macaque visual cortex, PLoS Biology, 9(4):e1000610

Sharika KM, Neggers SF, Gutteling TP, Van der Stigchel S, Dijkerman HC, Murthy A., (2013), Proactive control of sequential saccades in human supplementary eye field., Proc Natl Acad Sci U S A. , 110(14):1311-20

Ray S and Maunsell JHR, (2011), Network rhythms influence the relationship between spike-triggered local field potential and functional connectivity, J Neurosci, 31(35):12674-82

Ramakrishnan, A. and Murthy A. , (2013), Brain Mechanisms for decision-making and motor control., Progress in Brain Research, 202:321-45

Ni AM, Ray S and Maunsell JHR, (2012), Tuned Normalization Explains the Size of Attention Modulations, Neuron, 73(4):803-813

Bhutani N, Sureshbabu Ramakrishnan, A. Farooqui A, Behari M, Goyal V, and Murthy A. , (2013), Queuing of concurrent movement plans by basal ganglia., Journal of Neuroscience , 33(24): 9985-97

Ray S, Ni AM and Maunsell JHR, (2013), Strength of Gamma Rhythm depends on Normalization, PLoS Biology, 11(2):e1001477

Srinath R and Ray S , (2014), Effect of Amplitude Correlations on Coherence in the Local Field Potential, Journal of Neurophysiology, 112(4):741-51

Ray S and Maunsell, JHR, (2015), Do gamma oscillations play a role in cerebral cortex?, Trends in Cognitive Sciences, Vol. 19(2): 78-85

Ray S, (2015), Challenges in the quantification and interpretation of spike-LFP relationships, Current Opinion in Neurobiology, 31: 111-118

Sharika KM, Ramakrishnan, A. and Murthy A., (2014), Use of exocentric and egocentric representations in the concurrent planning of sequential saccades., Journal of Neuroscience , 34:16009-21.

Subhash Chandran K S, Mishra A, Shirhatti V and Ray S, (2016), Comparison of Matching Pursuit algorithm with other signal processing techniques for computation of the time-frequency power spectrum of brain signals, Journal of Neuroscience, 36(12): 3399-3408

Gopal Atul PA., Vishwanathan P. and Murthy A., (2015), A common stochastic accumulator with effector-dependent noise can explain eye-hand coordination.J. Neurophysiology, .J. Neurophysiology 113(7), 113(7):2033-48

Shirhatti V, Borthakur A, and Ray S, (2016), Effect of Reference Scheme on Power and Phase of the Local Field Potential, Neural Computation, Vol 28, No. 5:882-913. doi:10.1162/NECO_a_00827

Dubey A and Ray S, (2016), Spatial Spread of local field potential is band-pass in the primate visual cortex, Journal of Neurophysiology, 116(4):1986-99

Sharika KM, and Murthy A. , (2015), Contextual modulation during the planning of sequential saccades. Journal of Vision., Journal of Vision. , 113(7):1-18

Gopal Atul P. and Murthy A., (2015), Eye-hand coordination during a double-step task: evidence for a common stochastic accumulator., J. Neurophysiology

Nelson M.J., Murthy A. and Schall J.D., (2016), Neural control of visual search by frontal eye field: Identification of stages of processing and neural accumulation with a race to threshold., J. Neurophysiology , 115(4):, 1954-69

Gopal Atul P. and Murthy A., (2016), A common control signal and a ballistic stage can explain the control of coordinated eye-hand movements., J. Neurophysiology , 115(5): , 2470-84

Singh P, Jana S, Ghosal A. and A. Murthy., (2016), Exploration of joint redundancy but not task space variability facilitates supervised motor learning., Proc. Natl Acad Sci (USA)., 113(50):, 14414-19

See also

News

CNS awarded TATA Trusts grant to study “Alzheimer Disease”
1 Sep 2014

Dr. Naren Ramanan awarded the “SwarnaJayanti Fellow for the year 2012-2013”
1 Sep 2012

Dr. Deepak Nair awarded the IYBA (Innovative Young Biotechnologist Award) 2013
1 Sep 2013

Dr. Sridharan Devarajan awarded a Wellcome Trust DBT India Alliance Fellowship (2015)
1 Sep 2015

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