Publications

2016

Agrawal A, Hari KVS & Arun SP, (2019), Reading Increases the Compositionality of Visual Word Representations, Psychological Science , (in press)

Sreenivasan, V. and Sridharan, D*, (2019), Subcortical connectivity correlates selectively with attention’s effects on spatial choice bias, PNAS, (in press)

Yogesh Dahiya©, Saloni Rose, Shruti Thapliyal, Shivam Bhardwaj, Maruthi Prasad and Kavita Babu©, (2019), Differential regulation of innate and learned behavior by CREB1/CRH-1 in Caenorabditis elegans, The Journal of Neuroscience, Accepted

Kavita Babu© and Sandhya P Koushika©, (2019), Sydney Brenner (1927-2019), Current Science, 16(12):, 2106-09

Banerjee, S., Grover, S., Ganesh, S. and Sridharan, D*. , (2019), Sensory and decisional components of endogenous attention are dissociable., Journal of Neurophys, (in press)

Zhitao Hu*, Edward C.G. Pym*, Kavita Babu*, Amy B. Vahlishan Murray*, and Joshua M. Kaplan, (2011), A neuropeptide-mediated stretch response links muscle contraction to changes in neurotransmitter release, Neuron 2011, 71(1): , 92-102

Kavita Babu, Zhitao Hu, Shih-Chieh Chien, Gian Garriga and Joshua M. Kaplan, (2011), The Immunoglobulin super family protein RIG-3 prevents synaptic potentiation and regulates Wnt signaling, Neuron, 71(1): , 103-16

Pratima Pandey, Ashwani Bhardwaj and Kavita Babu, (2017), Regulation of WNT Signaling at the Neuromuscular Junction by the Immunoglobulin Super-Family Protein RIG-3 in Caenorhabditis elegans, Genetics, 206(3): , 1521-34

Shruti Thapliyal, Amruta Vasudevan*, Yongming Dong*, Jihong Bai, Sandhya P. Koushika and Kavita Babu, (2018), The C-terminal of CASY-1/Calsyntenin regulates GABAergic synaptic transmission at the Caenorhabditis elegans neuromuscular junction, PLoS Genetics, 14(3):, e1007236

Shruti Thapliyal, Shruthi Ravindranath and Kavita Babu, (2018), Regulation of glutamate signaling in the sensorimotor circuit by CASY-1A/Calsyntenin in Caenorhabditis elegans, Genetics, 208(4): , 1553-64

Ashwani Bhardwaj*, Saurabh Thapliyal*, Yogesh Dahiya and Kavita Babu, (2018), FLP-18 functions through the G-protein coupled receptors NPR-1 and NPR-4 to modulate reversal length in Caenorhabditis elegans, The Journal of Neuroscience , 38(20): , 4641-54

Pallavi Sharma*, Lei Li*, Haowen Liu, Vina Tikiyani, Zhitao Hu© and Kavita Babu©, (2018), The Claudin-like protein, HPO-30, is required to maintain LAChRs at the Caenorhabditis elegans neuromuscular junction, The Journal of Neuroscience, 38(32): , 7072-87

Shruti Thapliyal and Kavita Babu, (2018), Pentylenetetrazole (PTZ)-induced Convulsion Assay to Determine GABAergic Defects in Caenorhabditis elegans, Bio-protocol, 8(17): , e2989

Vina Tikiyani, Lei Li, Pallavi Sharma, Haowen Liu, Zhitao Hu and Kavita Babu, (2018), Wnt secretion is regulated by the tetraspan protein HIC-1 through its interaction with Neurabin/NAB-1, Cell Reports , 25(7): , 1856-71

Raunaq Deo*, Manish S. Kushwah*, Sukrut C. Kamerkar, Nagesh Y. Kadam, Srishti Dar, Kavita Babu, Anand Srivastava and Thomas J. Pucadyi, (2018), ATP-dependent membrane remodeling links EHD1 functions to endocytic recycling, Nature Communications, 9(1): , 5187

Shruti Thapliyal© and Kavita Babu©, (2019), C. elegans Locomotion: Finding Balance in Imbalance, Advances in Experimental Medicine and Biology, 1112:, 185-96

Puneet Singh, Ketan Jhunjhunwala, Albert Stezin, Abhishek Lenka, Pramod Kumar Pal, Ashitava Ghosal, Aditya Murthy, (2019), Basal ganglia contributions during the learning of a visuomotor rotation: effect of dopamine, deep brain stimulation and reinforcement, European Journal of Neuroscience, (accepted)

Siddharth Nanguneri, Pramod RT, Nadia Efimova, Debajyoti Das, Mini Jose, Tatyana Svitkina, Deepak Nair, (2019), Characterization of nanoscale organization of F-actin in morphologically distinct dendritic spines in vitro using supervised learning, eNeuro, Accepted

Katti H & Arun SP, (2019), Are you from North or South India? A hard face classification task reveals systematic representational differences between humans and machines, Journal of Vision, in press

Sagar, V., Sengupta, R., & Sridharan, D*., (2019), Exogenous attention facilitates performance through dissociable sensitivity and bias mechanisms, Scientific Reports, (in press)

Katti H, Peleen MV and Arun SP, (2019), Machine vision benefits from human contextual expectations, Scientific Reports, 9:, 2112

Biswas A and Ray S, (2019), Alpha neurofeedback has a positive effect for participants who are unable to sustain their alpha activity, eNeuro, Accepted

Verbruggen, F., Aron, A. R., Band, G. P., Beste, C., Bissett, P. G., Brockett, A. T.,… Murthy, A., … Boehler, C. N., (2019), A consensus guide to capturing the ability to inhibit actions and impulsive behaviors in the stop-signal task., ELife, 8, e46323

Padmala S, Sambuco N and Pessoa L, (2019), Interactions between reward motivation and emotional processing, Progress in Brain Research, 247:, 1-21

J. Engelmann, E. Damaraju, S. Padmala, and L. Pessoa, (2009), Combined effects of attention and motivation on visual task performance: Transient and sustained motivational effects, Frontiers in Human Neuroscience, 3:, 4

S-L. Lim, S. Padmala and L. Pessoa, (2009), Segregating the significant from the mundane on a moment-to-moment basis via direct and indirect amygdala contributions, Proceedings of the National Academy of Sciences, USA, 106, 16841-16846

S. Padmala and L. Pessoa, (2010), Interactions between cognition and motivation during response inhibition, Neuropsychologia, 48, 558-565

S. Padmala and L. Pessoa, (2010), Moment-to-moment fluctuations in fMRI amplitude and inter-region coupling are predictive of inhibitory performance, Cognitive, Affective, and Behavioral Neuroscience, 10, 279-297

S. Padmala, S-L. Lim and L. Pessoa, (2010), Pulvinar and affective significance: responses track moment-to-moment stimulus visibility, Frontiers in Human Neuroscience

S. Padmala and L. Pessoa, (2011), Reward reduces conflict by enhancing attentional control and biasing visual cortical processing, Journal of Cognitive Neuroscience , 23(11):, 3419-32

S. Padmala, A. Bauer and L. Pessoa, (2011), Negative emotion impairs conflict-driven executive control, Frontiers in Psychology , 2:, 192

K. Hu, A. Bauer, S. Padmala and L. Pessoa, (2012), Threat of bodily harm has opposing effects on cognition, Emotion , 12(1):, 28-32

J-M Choi, S. Padmala and L. Pessoa, (2012), Impact of state anxiety on the interaction between threat monitoring and cognition, Neuroimage , 59(2):, 1912-23

L. Pessoa, S. Padmala, A. Kenzer and A. Bauer, (2012), Interactions between cognition and emotion during response inhibition, Emotion , 12(1):, 192-7

J. Kinnison, S. Padmala, J-M Choi and L. Pessoa, (2012), Network analysis reveals increased integration during emotional and motivational processing, The Journal of Neuroscience, 32(24):, 8361-72

K. Hu*, S. Padmala* and L. Pessoa, (2013), Interactions between reward and threat during visual processing, Neuropsychologia , 51(9):, 1763-72

J-M Choi*, S. Padmala*, P. Spechler and L. Pessoa, (2014), Pervasive competition between threat and reward in the brain, Social Cognitive and Affective Neuroscience, 9:, 737-750

G. Bissonette, R. Gentry, S. Padmala, L. Pessoa and M. Roesch, (2014), Impact of appetitive and aversive outcomes on brain responses: linking the animal and human literatures, Frontiers in Systems Neuroscience, 8:, 24

S. Padmala and L. Pessoa, (2014), Motivation versus aversive processing during perception, Emotion, 14(3): , 450-454

B. McMenamin, S. Langeslag, M. Sirbu, S. Padmala and L. Pessoa, (2014), Network organization unfolds over time during periods of anxious anticipation, The Journal of Neuroscience, 34(34):, 11261-11273

L-R Dougherty, S-L Blankenship, P-A Spechler, S. Padmala and L.Pesso, (2015), An fMRI Study of Cognitive Reappraisal in Children: Divergent Effects on Brain and Behavior, Journal of Psychopathology and Behavioral Assessment, 37:, 634-644

J-M Choi*, S. Padmala* and L. Pessoa, (2015), Counteracting effect of threat on reward enhancements during working memory, Cognition and Emotion, 29:, 1517-1526

Yokoyama T*, S. Padmala* and L. Pessoa, (2015), Reward learning and negative emotion during rapid attentional competition, Frontiers in Psychology, 6:, 269

L-R Dougherty, S-L Blankenship, P-A Spechler, S. Padmala and L.Pessoa, (2015), An fMRI Study of Cognitive Reappraisal in Children: Divergent Effects on Brain and Behavior, Journal of Psychopathology and Behavioral Assessment, 37:, 634-644

C. Sours, J. Kinnison, S. Padmala, R-P. Gullapalli and L. Pessoa, (2018), Altered segregation between task-positive and task-negative regions in mild traumatic brain injury, Brain Imaging and Behavior, 12(3):, 697-709

S. Padmala, M. Sirbu and L. Pessoa, (2017), Potential reward reduces the adverse impact of negative distractor stimuli, Social Cognitive and Affective Neuroscience, 12:, 1402-1413

S. Padmala*, N. Sambuco*, M. Codispoti and L. Pessoa., (2018), Attentional capture by simultaneous pleasant and unpleasant emotional distractors, Emotion, 18(8):, 1189-1194

C-T Meyer*, S. Padmala* and L. Pessoa, (2019), Dynamic threat processing, Journal of Cognitive Neuroscience, 31(4):, 522-542

Dubey A and Ray S, (2019), Cortical electrocorticogram (ECoG) is a local signal, Journal of Neuroscience, Accepted

Prabaha Gangopadhyay and Jhilik Das, (2019), Do Primates and Deep Artificial Neural Networks Perform Object Categorization in a Similar Manner?, Journal of Neuroscience, 39(6):, 946-948; doi:10.1523/JNEUROSCI.2458-18.2018

Muthukumaran Venkatachalapathy, Vivek Belapurkar, Mini Jose , Arnaud Gautier and Deepak Nair, (2019), Live cell super resolution imaging by radial fluctuations using fluorogen binding tags, Nanoscale , 11 (8), 3626-3632

Sharath Umesh,Shweta Pant,Srivani Padmaa, Sumitash Jana, Varsha Vasudevan, Aditya Murthy, Sundarrajan Asokan , (2019), A novel Fibre-Bragg grating system for eye tracking, Journal of Advanced Research, 16: , 24-34

Kumar, S., Sreenivasan. V., Talukdar, P., Pestilli, F., Sridharan, D*., (2019), ReAl-LiFE: Accelerating the discovery of individualized brain connectomes on GPUs, In proceedings of the 33rd AAAI Conference on Artificial Intelligence, (in press)

Kundu, J. N., Srinivas, R., Babu, V. R., Sridharan, D*., (2017), A biologically-inspired sparse, topographic recurrent neural network model for robust change detection, NIPS workshop on Cognitively Informed Artificial Intelligence (CIAI), Oral spotlight presentation

Sundaresan, M., Nabeel, A., & Sridharan, D*., (2017), Mapping distinct timescales of functional interactions among brain networks, In Advances in Neural Information Processing Systems, (pp. 4109-4118)

Sridharan, D*., Steinmetz, N. A., Moore, T., & Knudsen, E. I., (2017), Does the superior colliculus control perceptual sensitivity or choice bias during attention? Evidence from a multialternative decision framework, Journal of Neuroscience, 37(3), 480-511

Knudsen, E. I., Schwarz, J. S., Knudsen, P. F., & Sridharan, D*. , (2017), Space-Specific Deficits in Visual Orientation Discrimination Caused by Lesions in the Midbrain Stimulus Selection Network, Current Biology, 27(14), 2053-2064

Sartorel E, Ünlü C, Jose M, Massoni-Laporte A, Meca J, Sibarita JB, McCusker D, (2018), Phosphatidylserine and GTPase activation control Cdc42 nanoclustering to counter dissipative diffusion, Molecular Biology of the Cell, 29(11), 1299-1310

Ahmad F, Das D, Kommaddi RP, Diwakar L, Gowaikar R, Rupanagudi KV, Bennett DA, Ravindranath V, (2018), Isoform-specific hyperactivation of calpain-2 occurs presymptomatically at the synapse in Alzheimer’s disease mice and correlates with memory deficits in human subjects, Scientific Reports, 8:, 13119

Chatterjee A, Chinappa K, Ramanan N, Mani S, (2018), Centrosome inheritance does not regulate cell fate in granule neuron progenitors of the developing cerebellum, Cerebellum, 17:, 685-691

Wang C, Chen X, Lee H, Deshmukh SS, Yoganarasimha D, Savelli F, and Knierim JJ, (2018), Egocentric coding of external items in the lateral entorhinal cortex, Science, 362(6417), 945-949

Marathe S, D'almeida PL, Virmani G, Bathini P, Alberi L, (2018), Effects of Monoamines and Antidepressants on Astrocyte Physiology: Implications for Monoamine Hypothesis of Depression, Journal of Experimental Neuroscience, 23:, 1-7

Das A and Ray S, (2018), Effect of stimulus contrast and visual attention on spike-gamma phase relationship in macaque primary visual cortex, Frontiers in Computational Neuroscience, 12:, 66

Saxena R, Barde W, and Deshmukh SS, (2018), Inexpensive, scalable camera system for tracking rats in large spaces, Journal of Neurophysiology, 120:, 2383–2395

Jana S. and Murthy A, (2018), Task context determines whether common or separate inhibitory signals underlie the control of eye-hand movements. (2018), Journal of Neurophysiology , 120:, 1695-1711

Venkataratamani PV and Murthy A, (2018), Distinct mechanisms explain the control of reach speed planning: evidence from a race model framework, Journal of Neurophysiology, 120:, 1293-1306

Salelkar S, Somasekhar GM, and Ray S, (2018), Distinct frequency bands in the local field potential are differently tuned to stimulus drift rate, Journal of Neurophysiology, 120:, 681-692

Sharath Umesh, Shweta Pant, Srivani Padma Goggi, Sundarrajan Asokan, Sumitash Jana, Varsha Vasudevan and Murthy A., (2018), Method and device for tracking eye movement of a subject, Indian Provisional Patent, 201841002316

Ratan Murty NA & Arun SP, (2018), Multiplicative mixing of object identity and image attributes in single inferior temporal neurons., PNAS, 115:, E3276-85

Shirhatti V and Ray S, (2018), Long wavelength (Reddish) hues induce unusually large gamma oscillations in the primate primary visual cortex, PNAS, 115, 4489-94

Dinavahi MVPS*, Shirhatti V*, Ravishankar P* and Ray S, (2018), Large visual stimuli induce two distinct gamma oscillations in primate visual cortex, Journal of Neuroscience, 38, 2730-44

Kommaddi RP, Das D, Karunakaran S, Nanguneri S, Bapat D, Ray A, Shaw E, Bennett DA, Nair D, Ravindranath V, (2018), Aβ mediates F-actin disassembly in dendritic spines leading to cognitive deficits in Alzheimer’s disease, J Neuroscience, 38, 1085–1099

Pramod RT & Arun SP, (2018), Symmetric objects become special in perception due to generic computations in neurons, Psychological Science, 29:95-109

Subhash Chandran KS, Seelamantula CS, and Ray S, (2018), Duration Analysis Using Matching Pursuit Algorithm Reveals Longer Bouts of Gamma Rhythm, Journal of Neurophysiology, 119(3), 808-821

Biswas A and Ray S, (2017), Control of alpha rhythm (8-13 Hz) using neurofeedback, Journal of the Indian Institute of Science, 97:4, 527-531

Venkataratamani PV, Gopal Atul PA, Murthy A., (2018), An independent race model involving an abort and re-plan strategy explains reach redirecting movements during planning and execution, European Journal of Neuroscience, 47:, 460-478

Jana Sumitash, Gopal Atul PA. and Murthy A., (2017), A Computational Framework for Understanding Eye–Hand Coordination, J. Indian Inst. Sci., 97(4): , 543–554

Banerjee, S., Grover, S., & Sridharan, D*., (2017), Unraveling Causal Mechanisms of Top-Down and Bottom-Up Visuospatial Attention with Non-invasive Brain Stimulation, Journal of the Indian Institute of Science, 97 (4), 451-475

P Meenakshi and J Balaji, (2017), Neural Circuits of Memory Consolidation and Generalisation, Journal of the Indian Institute of Science, 97, 487–495

Varsha V, Radhakant Padhi, Murthy A, (2017), A Stochastic Feedback Model to Simulate Saccadic Eye Movement Variability, IFAC-PapersOnLine, Volume 50, Issue 1,, 13521-13525

Singh A and J Balaji , (2017), Sensitive Estimation of Flavor Preferences in STFP Using Cumulative Time Profiles, Bio-protocol, Vol 7

Jain D, Jakhalekar IR, Deshmukh SS, (2017), Navigational strategies and their neural correlates, Journal of the Indian Institute of Science, 97 (4), 511-525

Donlea JN, Ramanan N, Silverman N and Shaw PJ , (2014), Genetic rescue of functional senescence in synaptic and behavioral plasticity, Sleep, 37: 1427-1437

Lee H, Wang C, Deshmukh SS, Knierim JJ, (2015), Neuronal population evidence of functional heterogeneity along the CA3 transverse axis: pattern completion versus pattern separation, Neuron, 87(5):, 1093-105

Ravindranath V, Dang HM, Goya RG, Mansour H, Nimgaonkar VL, Russell VA, Xin Y, (2015), Regional research priorities in brain and nervous system disorders, Nature, 527(7578):S198-206

Ravindranath, V. and Strobel H.W., (2013), Cytochrome P450-mediated metabolism in brain: functional roles and their implications, Expert Opin Drug Metab Toxicol, 9: 551-558

Karunakaran S, Ravindranath V., (2009), Activation of p38 MAPK in the substantia nigra leads to nuclear translocation of NF-kappaB in MPTP-treated mice: implication in Parkinson’s disease., J Neurochem. , 109(6):1791-9.

Saeed U, Karunakaran S, Meka DP, Koumar RC, Ramakrishnan S, Joshi SD, Nidadavolu P, Ravindranath V., (2009), Redox activated MAP kinase death signaling cascade initiated by ASK1 is not activated in female mice following MPTP: novel mechanism of neuroprotection., Neurotox Res., 16(2):116-26.

Alcino J Silva, Yu Zhou, Thomas Rogerson, Justin Shobe, J Balaji, (2009), Molecular and cellular approaches to memory allocation in neural circuits, Science, 326, 391-395

Yu Zhou, Jaejoon Won, Mikael Guzman Karlsson, Miou Zhou, Thomas Rogerson, Jayaprakash Balaji, Rachael Neve, Panayiota Poirazi, Alcino J Silva, (2009), CREB regulates excitability and the allocation of memory to subsets of neurons in the amygdala., Nature neuroscience, 12, 1438-1443

K.M. Sharika, Supriya Ray and Murthy A., (2009), Attention for Action during Error Correction, Progress in Brain Research, 176: , 227-244

Murthy A, Ray S, Shorter SM, Schall JD,Thompson KG, (2009), Neural Control of Visual Search by Frontal Eye Field: Effects of Unexpected Target Displacement on Visual Selection and Saccade Preparation, J. Neurophysiology, 101: , 2485-2507

Feger BJ, Thompson JW, Dubois LG, Kommaddi RP, Foster MW, Mishra R, Shenoy SK, Shibata Y, Kidane YH, Moseley MA, Carnell LS, Bowles DE., (2016), Microgravity induces proteomics changes involved in endoplasmic reticulum stress and mitochondrial protection, Sci. Rep., 6:34091

Ahmad F, Singh K, Das D, Gowaikar R, Shaw E, Ramachandran A, Rupanagudi KV, Kommaddi RP, Bennett DA, Ravindranath V, (2017), Reactive Oxygen Species-Mediated Loss of Synaptic Akt1 Signaling Leads to Deficient Activity-Dependent Protein Translation Early in Alzheimer’s Disease, Antioxid Redox Signal, 27(16):1269-1280

Jean-Charles PY, Yu SM, Abraham D, Kommaddi RP, Mao L, Strachan RT, Zhang ZS, Bowles DE, Brian L, Stiber JA, Jones SN, Koch WJ, Rockman HA, Shenoy SK, (2017), Mdm2 regulates cardiac contractility by inhibiting GRK2-mediated desensitization of β-adrenergic receptor signaling, JCI Insight, 2(17);pii: 95998

Katti H, Peelen MV & Arun SP, (2017), How do targets, nontargets and context influence real-world object detection?, Attention Perception and Psychophysics

Goddard CA, Sridharan D*, Huguenard JR, Knudsen EI, (2012), Gamma oscillations are generated locally in an attention-related midbrain network, Neuron., 73(3):567-80

Sridharan D*, Knudsen EI., (2015), Selective disinhibition: A unified neural mechanism for predictive and post hoc attentional selection, Vision Res, 116(Pt B), 194-209

Marathe S, Jaquet M, Annoni J-M and Alberi L, (2017), Jagged1 Is Altered in Alzheimer’s Disease and Regulates Spatial Memory Processing, Frontiers in Cellular Neuroscience

Gopal Atul P. and Murthy A., (2015), Eye-hand coordination during a double-step task: evidence for a common stochastic accumulator., J. Neurophysiology

Gopal Atul PA, Jana Sumitash and Murthy A., (2017), Contrasting speed accuracy trade-offs for eye and hand movements reveal the optimal nature of saccade kinematics, J. Neurophysiology , 118(3):1664-1676

Sendnilnathan N., Basu D., and Murthy A., (2017), Simultaneous analysis of the LFP and spiking activity reveals essential components of a visuomotor transformation in the frontal eye field, Proc Natl Acad Sci U S A, 114 (24) : 6370-6375

Bhutani N., Sengupta S., Basu D., Prabhu N. and Murthy A., (2017), Parallel activation of prospective motor plans during the planning of sequential saccades, European Journal of Neuroscience, 45 : 631-642

Pouget P, Murthy A, and Stuphorn V., (2017), Cortical control and performance monitoring of interrupting and redirecting movements, Philosophical Transactions of the Royal Soc., (B) 372: 20160201

Singh P., Ghosal A. and Murthy A., (2016), Exploration of joint redundancy but not task space variability facilitates supervised motor learning, Proc. Natl Acad. Sci. (USA), 113(50) : 14414-19

Gopal Atul P. and Murthy A., (2016), A common control signal and a ballistic stage can explain the control of coordinated eye-hand movements., J. Neurophysiology , 115(5): 2470-84

Vaidhiyan N, Sundaresan R & Arun SP , (2017), Neural dissimilarity indices that predict oddball detection in behaviour, IEEE Transactions on Information Theory,

Saykally JN, Hatic H, Keeley KL, Jain S, Ravindranath V, (2016), Citron BA: Withaniasomnifera Extract Protects Model Neurons from In Vitro Traumatic Injury, Cell Transplant, 26(7): 1193–1201

Darius Widera, Christin Klenke, Nair D, Meike Heidbreder, Sebastian Malkusch, Jean-Baptiste Sibarita, Daniel Choquet, Barbara Kaltschmidt, Mike Heilemann, Christian Kaltschmidt, (2016), Single-particle tracking uncovers dynamics of glutamate-induced retrograde transport of NF-κB p65 in living neurons, Neurophotonics, , 3(4) , 041804-041804.

S Kumar, A Singh, VR Singh, JB George, J Balaji, (2016), Saturation Dynamics Measures Absolute Cross Section and Generates Contrast within a Neuron, Biophysical Journal, 111 (6), , 1328-1336

Ratan Murty NA & Arun SP, (2017), Effect of silhouetting and inversion on view invariance in the monkey inferotemporal cortex, Journal of Neurophysiology

Ratan Murty NA & Arun SP, (2017), A Balanced Comparison of Object Invariances in Monkey IT Neurons, eNeuro, 4(2), e0333-16

Ratan Murty NA & Arun SP, (2017), Seeing a straight line on a curved surface: Decoupling of patterns from surfaces by single IT neurons, Journal of Neurophysiology , 117: , 104-116

Sumitash J, Gopal Atul PA, and Murthy A., (2017), Evidence of common and separate eye and hand accumulators underlying flexible eye-hand coordination, J. Neurophysiology, 117(1) : 348-364

Marathe S, Alberi L , (2014), Monitoring Notch activity in the mouse., Methods in Molecular Biology 2014, Springer (Book Chapter)

Marathe S, Alberi L, (2015), Notch in memories: points to remember, Hippocampus

Alberi L, Hoey SE, Brai E, Scotti AL, Marathe S , (2013), Notch signaling in the brain: in good and bad times., Ageing Research Reviews

Swananda Marathe, Lavinia Alberi , (2014), Paradoxical effects of notch signaling in response to environmental enrichment during critical period: molecular mechanism underlying cognitive reserve?, AAIC2014,

Brai E*, Marathe S*, Astori S, Ben Fredj N, Perry E, Lamy C, Alberi L , (2015), Notch1 regulates hippocampal plasticity through interaction with the Reelin pathway, glutamatergic transmission and CREB signaling., Frontiers in Cellular Neuroscience

Husain BF*, Nanavaty I*, Marathe S, Rajendran R, Vaidya VA , (2015), Hippocampal transcriptional and neurogenic changes evoked by combination yohimbine and imipramine treatment, Progress in Neuropsychopharmacology and Biological Psychiatry

Marathe S, Liu S, Brai E, Kaczarowski M, Alberi L , (2015), Notch signaling in response to excitotoxicity induces neurodegeneration via erroneous cell cycle re-entry., Cell Death and Differentiation

Brai E, Marathe S, Zentilin L, Giacca M, Nimpf J, Kretz R, Scotti A, Alberi L., (2014), Notch1 activity in the olfactory bulb is odour-dependent and contributes to olfactory behavior, European Journal of Neuroscience

I. Nanavaty, S. Marathe, V. Vaidya., (2012), Neurogenic effects of rapid action antidepressants, International journal of developmental neuroscience

. Jhaveri DJ*, Nanavaty I*, Prosper BW, Marathe S, Husain BF, Kernie SG, Bartlett PF, Vaidya VA. , (2014), Opposing effects of α2- and β-adrenergic receptor stimulation on quiescent neural precursor cell activity and adult hippocampal neurogenesis, PLoS One

Jhaveri DJ, Mackay EW, Hamlin AS, Marathe SV, Nandam LS, Vaidya VA, Bartlett PF , (2010), Antidepressants that regulate norepinephrine levels activate stem and progenitor cells in the adult hippocampus via β3-adrenergic receptors, Journal of Neuroscience

Yanpallewar SU*, Fernandes K*, Marathe SV*, Vadodaria KC, Jhaveri D, Rommelfanger K, Ladiwala U, Jha S, Muthig V, Hein L, Bartlett P, Weinshenker D, Vaidya VA, (2010), α2-adrenoceptor blockade accelerates the neurogenic, neurotrophic, and behavioral effects of chronic antidepressant treatment., Journal of Neuroscience

Ray A, Kambali M, Ravindranath V, (2016), Thiol Oxidation by Diamide Leads to Dopaminergic Degeneration and Parkinsonism Phenotype in Mice: A Model for Parkinson’s Disease, Antioxid Redox Signal, 25(5):252-67

Ahmad F, Singh K, Das D, Gowaikar R, Shaw E, Ramachandran A, Rupanagudi KV, Kommaddi RP, Bennett DA, Ravindranath V, (2017), Reactive Oxygen Species-Mediated Loss of Synaptic Akt1 Signaling Leads to Deficient Activity-Dependent Protein Translation Early in Alzheimer’s Disease, Antioxid Redox Signal, 27(16):1269-1280

Izeddin I, Boulanger J, Racine V, Specht CG, Kechkar A, Nair D, Triller A, Choquet D, Dahan M, Sibarita JB., (2012), Wavelet analysis for single molecule localization microscopy, Optics express, 20, 2081-2095

Heidbreder M, Zander C, Malkusch S, Widera D, Kaltschmidt B, Kaltschmidt C, Nair D, Choquet D, Sibarita JB, Heilemann M. Olivier Rossier, Vivien Octeau, Jean-Baptiste Sibarita, Cécile Leduc, Béatrice Tessier, Nair D, Volker Gatterdam, Olivier Destaing, Corinne Albigès-Rizo, Robert Tampé, Laurent Cognet, Daniel Choquet, Brahim Lounis & Grégory Giannone, (2012), Integrins β1 and β3 exhibit distinct dynamic nanoscale organizations inside focal adhesions, Nature cell biology, 14, , 1057-1067

Hoze N, Nair D, Hosy E, Sieben C, Manley S, Herrmann A, Sibarita JB, Choquet D, Holcman D., (2012), Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging, Proceedings of the National Academy of Sciences, 109, 17052-17057

Heidbreder M1, Zander C, Malkusch S, Widera D, Kaltschmidt B, Kaltschmidt C, Nair D, Choquet D, Sibarita JB, Heilemann M., (2012), TNF-α influences the lateral dynamics of TNF receptor I in living cells, Biochimica et Biophysica Acta (BBA)-Molecular Cell Research, 1823, 1984-1989

Jose M, Tollis S, Nair D, Sibarita JB, McCusker D., (2013), Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism, J Cell Biol, 407-418, jcb. 201206081

Adel Kechkar, Nair D, Mike Heilemann, Daniel Choquet, Jean-Baptiste Sibarita, (2013), Real-time analysis and visualization for single-molecule based super-resolution microscopy, PLoS One, 8, e62918

Nair D, Hosy E, Petersen JD, Constals A, Giannone G, Choquet D, Sibarita JB., (2013), Super-resolution imaging reveals that AMPA receptors inside synapses are dynamically organized in nanodomains regulated by PSD95, Journal of Neuroscience, 33 , 13204-13224

Vincent Fraisier , Amal Kasri , Stéphanie Miserey-Lenkei, Jean-Baptiste Sibarita, Nair D, Adeline Mayeux, Sabine Bardin, Yusuke Toyoda, Ina Poser, Andrei Poznyakovskiy, Bruno Goud, Anthony A. Hyman, Ariane Dimitrov, (2013), C11ORF24 is a novel type I membrane protein that cycles between the Golgi apparatus and the plasma membrane in Rab6-positive vesicles, Public Library of Science, doi:10.1371, 8, e82223

Anaël Chazeau, Amine Mehidi, Nair D, Jérémie J Gautier, Cécile Leduc, Ingrid Chamma, Frieda Kage, Adel Kechkar, Olivier Thoumine, Klemens Rottner, Daniel Choquet, Alexis Gautreau, Jean‐Baptiste Sibarita, Grégory Giannone, (2014), Nanoscale segregation of actin nucleation and elongation factors determines dendritic spine protrusion, The EMBO journal, 33, 2745-2764

Mini Jose, Sylvain Tollis, Nair D, Romain Mitteaua, Christophe Velours, Aurelie Massoni-Laporte, Anne Royou, Jean-Baptiste Sibarita, and Derek McCusker, (2015), A quantitative imaging-based screen reveals the exocyst as a network hub connecting endocytosis and exocytosis, Molecular biology of the cell, 26, 2519-2534

Callista B. Harper, Andreas Papadopulos, Sally Martin, Daniel R. Matthews, Garry P. Morgan, Tam H. Nguyen, Tong Wang, Nair D, Daniel Choquet & Frederic A. Meunier, (2016), Botulinum neurotoxin type-A enters a non-recycling pool of synaptic vesicles, Scientific reports, Sci Rep 6, , srep19654

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Bidyut Sarkar, Anand Kant Das, Senthil Arumugam, Sanjeev Kumar Kaushalya, Arkarup Bandyopadhyay, Jayaprakash Balaji, Sudipta Maiti, (2012), The dynamics of somatic exocytosis in monoaminergic neurons, Frontiers in physiology, 3, 414

A Singh, S Kumar, VP Singh, J Balaji, (2013), Optical microscopy methods for understanding learning and memory, CURRENT SCIENCE, 105 (11), 1537-1548

Miou Zhou, Weidong Li, Shan Huang, Juan Song, Ju Young Kim, Xiaoli Tian, Eunchai Kang, Yoshitake Sano, Cindy Liu, J Balaji, Shumin Wu, Yu Zhou, Ying Zhou, Sherveen N Parivash, Dan Ehninger, Lin He, Hongjun Song, Guo-li Ming, Alcino J Silva, (2013), mTOR Inhibition ameliorates cognitive and affective deficits caused by Disc1 knockdown in adult-born dentate granule neurons, Neuron, 77, 647-654

Rafał Czajkowski, Balaji Jayaprakash, Brian Wiltgen, Thomas Rogerson, Mikael C Guzman-Karlsson, Alison L Barth, Joshua T Trachtenberg, Alcino J Silva, (2014), Encoding and storage of spatial information in the retrosplenial cortex, Proceedings of the National Academy of Sciences, 111, 8661-8666

Yong-Seok Lee, Dan Ehninger, Miou Zhou, Jun-Young Oh, Minkyung Kang, Chuljung Kwak, Hyun-Hee Ryu, Delana Butz, Toshiyuki Araki, Ying Cai, J Balaji, Yoshitake Sano, Christine I Nam, Hyong Kyu Kim, Bong-Kiun Kaang, Corinna Burger, Benjamin G Neel, Alcino J Silva, (2014), Mechanism and treatment for learning and memory deficits in mouse models of Noonan syndrome, Nature neuroscience, 17 (12), , 1736-1743

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Thomas Rogerson, Balaji Jayaprakash, Denise J Cai, Yoshitake Sano, Yong-Seok Lee, Yu Zhou, Pallavi Bekal, Karl Deisseroth, Alcino J Silva, (2016), Molecular and Cellular Mechanisms for Trapping and Activating Emotional Memories, PloS one, 11 (8), , e0161655

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Sripati AP & Olson CR, (2010), Responses to compound objects in monkey inferotemporal cortex: The whole is equal to the sum of discrete parts, Journal of Neuroscience, 7948-60

Kim SS, Sripati AP & Bensmaia SJ, (2010), Predicting the timing of spikes evoked by tactile stimulation of the hand. Journal of Neurophysiology, Journal of Neurophysiology, 1484-96

Arun SP, (2012), Turning visual search time on its head, Vision Research, 86-92

Vaidhiyan N, Arun SP & Sundaresan R, (2012), Active sequential hypothesis testing with application to a visual search problem, Proceedings of the 2012 IEEE Symposium on Information Theory, Cambridge MA

Mohan K & Arun SP, (2012), Similarity relations in visual search predict rapid visual categorization, Journal of Vision, 19

Vighneshvel T & Arun SP, (2013), Does linear separability really matter? Complex search is explained by simple search, Journal of Vision, 1-24

Pramod RT & Arun SP, (2014), Features in visual search combine linearly, Journal of Vision, 1-20

Zhivago KA & Arun SP, (2014), Texture discriminability in monkey inferotemporal cortex predicts human texture perception, Journal of Neurophysiology, 112: 2745-55

Vighneshvel T & Arun SP, (2015), Coding of relative size in monkey inferotemporal cortex, Journal of Neurophysiology, 113: 2173-79

Ratan Murty NA & Arun SP, (2015), Dynamics of 3d view invariance in monkey inferotemporal cortex, Journal of Neurophysiology, 113: 2180-94

Zhivago KA & Arun SP, (2016), Selective IT neurons are selective along many dimensions, Journal of Neurophysiology, 115: 1512-1520

Pramod RT & Arun SP, (2016), Object attributes combine additively in visual search, Journal of Vision, 1-29

Pramod RT & Arun SP, (2016), Do computational models differ systematically from human object perception?, CVPR

Puneeth NC & Arun SP, (2016), A neural substrate for object permanence in monkey inferotemporal cortex, Scientific Reports, 6:30808

Sunder S & Arun SP, (2016), Look before you seek: Preview adds a fixed benefit to all searches, Journal of Vision, 1-17

Deshmukh SS, Yoganarasimha D, Voicu H, Knierim JJ, (2010), Theta modulation in the medial and the lateral entorhinal cortices, J. Neurophysiol, 104:994-1006

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Ceni C, Kommaddi RP, Thomas R, Vereker E, Liu X, McPherson PS, Ritter B, Barker PA, (2010), The p75NTR intracellular domain generated by neurotrophin-induced receptor cleavage potentiates Trk signaling, J Cell Sci, 123(Pt13):2299-307. PMID: 20530577

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Kommaddi RP, Shenoy SK, (2013), Arrestins and protein ubiquitination. Prog Mol Biol Transl Sci, 118:175-204. Review. PubMed PMID: 23764054.

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Sridharan D*, Ramamurthy DL, Knudsen EI., (2013), Spatial probability dynamically modulates visual target detection in chickens, Plos One, 8(5): e64136

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Saeed U, Ray A, Valli RK, Kumar AM, Ravindranath V, (2010), DJ-1 Loss by Glutaredoxin But Not Glutathione Depletion Triggers Daxx Translocation and Cell Death.Antioxid Redox Signal

Sehgal N., Gupta, A., Khader Valli, R., Shanker Datt Joshi, Jessica T. Mills, Edith Hamel, Khanna, P., Jain, S. C., Thakur, S.S. and Ravindranath V, (2012), Withania somnifera reverses Alzheimer’s disease pathology by enhancing low-density lipoprotein receptor-related protein in liver, Proc. Natl. Acad. Sci, USA 109: 3510-5

Ahmad F, Nidadavolu P, Durgadoss L, Ravindranath V., (2014), Critical cysteines in Akt1 regulate its activity and proteasomal degradation: implications for neurodegenerative diseases, Free Radic Biol Med, 74:118-28

Ray A, Sehgal N, Karunakaran S, Rangarajan G, Ravindranath V, (2015), MPTP activates ASK1-p38 MAPK signaling pathway through TNF-dependent Trx1 oxidation in parkinsonism mouse model, Free Radic Biol Med, 87:312-25

Li CL, Sathyamurthy A, Oldenborg A, Tank D and Ramanan N , (2014), Glycogen synthase kinase-dependent axon growth is mediated by SRF-dependent transcription in CNS neurons, J Neurosci, 34 (11): 4027-4042

Lu PPY and Ramanan N, (2012), A critical cell-intrinsic role for serum response factor in glial specification in the CNS, J. Neurosci. 32: 8012-23, PMID: 22674276

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Ramakrishnan A, Chokhandre S, Murthy A., (2010), Voluntary control of multi-saccade gaze shifts during movement preparation and execution, J. Neurophysiology, 103 : 2400-16

Ray S and Maunsell JHR., (2010), Differences in gamma frequencies across visual cortex restrict their possible use in computation, Neuron, 67:885-896

Ray S and Maunsell JHR, (2011), Different origins of gamma rhythm and high-gamma activity in macaque visual cortex, PLoS Biology, 9(4):e1000610

Ray S and Maunsell JHR, (2011), Network rhythms influence the relationship between spike-triggered local field potential and functional connectivity, J Neurosci, 31(35):12674-82

Ni AM, Ray S and Maunsell JHR, (2012), Tuned Normalization Explains the Size of Attention Modulations, Neuron, 73(4):803-813

Ray S, Ni AM and Maunsell JHR., (2013), Strength of Gamma Rhythm depends on Normalization, PLoS Biology, 11(2):e1001477

Srinath R and Ray S., (2014), Effect of Amplitude Correlations on Coherence in the Local Field Potential, Journal of Neurophysiology, 112(4):741-51

Ray S and Maunsell, JHR, (2015), Do gamma oscillations play a role in cerebral cortex?, Trends in Cognitive Sciences, Vol. 19(2): 78-85

Ray S, (2015), Challenges in the quantification and interpretation of spike-LFP relationships, Current Opinion in Neurobiology, 31: 111-118

Sharika KM, Ramakrishnan, A. and Murthy A., (2014), Use of exocentric and egocentric representations in the concurrent planning of sequential saccades., Journal of Neuroscience , 34:16009-21.

Subhash Chandran K S, Mishra A, Shirhatti V and Ray S., (2016), Comparison of Matching Pursuit algorithm with other signal processing techniques for computation of the time-frequency power spectrum of brain signals, Journal of Neuroscience, 36(12): 3399-3408

Shirhatti V, Borthakur A, and Ray S, (2016), Effect of Reference Scheme on Power and Phase of the Local Field Potential, Neural Computation, Vol 28, No. 5:882-913. doi:10.1162/NECO_a_00827

Dubey A and Ray S, (2016), Spatial Spread of local field potential is band-pass in the primate visual cortex, Journal of Neurophysiology, 116(4):1986-99

Sharika KM, and Murthy A. , (2015), Contextual modulation during the planning of sequential saccades. Journal of Vision., Journal of Vision. , 113(7):1-18

Nelson M.J., Murthy A. and Schall J.D., (2016), Neural control of visual search by frontal eye field: Identification of stages of processing and neural accumulation with a race to threshold., J. Neurophysiology , 115(4):, 1954-69

Gopal Atul PA., Vishwanathan P. and Murthy A., (2015), A common stochastic accumulator with effector-dependent noise can explain eye-hand coordination.J. Neurophysiology, .J. Neurophysiology 113(7), 113(7):2033-48

Bhutani N, Sureshbabu Ramakrishnan, A. Farooqui A, Behari M, Goyal V, and Murthy A. , (2013), Queuing of concurrent movement plans by basal ganglia., Journal of Neuroscience , 33(24): 9985-97

Ramakrishnan, A. and Murthy A. , (2013), Brain Mechanisms for decision-making and motor control., Progress in Brain Research, 202:321-45

Sharika KM, Neggers SF, Gutteling TP, Van der Stigchel S, Dijkerman HC, Murthy A., (2013), Proactive control of sequential saccades in human supplementary eye field., Proc Natl Acad Sci U S A. , 110(14):1311-20

Bhutani N, Ray S, and Murthy A., (2012), Is saccade averaging determined by visual processing or movement planning?, J. Neurophysiology., 108: 3161-3171

Ray S., Bhutani N and Murthy A., (2012), Mutual inhibition and capacity sharing during parallel preparation of serial eye movements., Journal of Vision., 12(3)17:1-22

Ramakrishnan, A., Sureshbabu Ramakrishnan and Murthy A., (2012), Understanding how the brain changes its mind: microstimulation in the macaque frontal eye field reveals how saccade plans are changed., Journal of Neuroscience., 32(13) : 4457- 4472

Ray S., Bhutani N., V. Kapoor and Murthy A., (2011), Trans-saccadic integration of visual and motor processing during sequential eye movements., Experimental Brain Research, 215 : 13-25

Farooqui AA, Bhutani N, Kulashekhar S, Behari M, Goel V, Murthy A., (2011), Impaired conflict monitoring in Parkinson’s disease patients during an oculomotor redirect task, Exp Brain Res., 208(1) : 1-10

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