Arnab Nandi, Garima Virmani, Aatmika Barve, Swananda Marathe, (2021), DBscorer: an open source software for automated accurate analysis of rodent behavior in forced swim test and tail suspension test, eNeuro (accepted).
Jose M.*, Sivanand A., Channakeshava C., (2021), Cholesterol is a critical determinant for hippocampal neuronal polarity, Frontiers in Mol. Neuroscience, (in Press).
Kedia S., Mandal K., Netrakanti P.R., Jose M., Sisodia S.S., Nair D., (2021), Nanoscale organization of Nicastrin, the Substrate Receptor of the γ-Secretase Complex, as Independent Molecular Domains, Molecular Brain, (in Press).
Nair D., Kedia S., Jose M, (2021), Does altered probability of real-time diffusive collisions of membrane molecules trigger or delay Alzheimer’s Disease?, iSci. Note.
Tanwar M., Kateriya S., Nair D., Jose M*, (2021), Optogenetic modulation of real-time nanoscale dynamics of HCN channels using photoactivated adenylyl cyclases, RSC Chemical Biology, 2(3), 863-875.
Kedia S., Ramakrishna P., Netrakanti P.R., Sisodia SS, Jose M., Kumar S, Mahadevan A, Ramanan N. Nadkarni S., Nair D., (2021), Alteration in synaptic nanoscale organization dictates amyloidogenic processing in Alzheimer’s disease, IScience, 24(1), 101924.
Kedia, S., Ramakrishna, P., Netrakanti, P. R., Jose, M., Sibarita, J. B., Nadkarni, S., & Nair, D., (2020), Real-time nanoscale organization of amyloid precursor protein, Nanoscale, 12(15), 8200-8215.
Venkatesan, S., Subramaniam, S., Rajeev, P., Chopra, Y., Jose, M., & Nair, D, (2020), Differential scaling of synaptic molecules within functional zones of an excitatory synapse during homeostatic plasticity, ENeuro, 7(2).
Nanguneri, S., Pramod, R. T., Efimova, N., Das, D.,Jose, M., Svitkina, T., & Nair, D., (2019), Characterization of nanoscale organization of f-actin in morphologically distinct dendritic spines in vitro using supervised learning, Eneuro, 6(4).
Venkatachalapathy, M., Belapurkar, V., Jose, M., Gautier, A., & Nair, D, (2019), Live cell super resolution imaging by radial fluctuations using fluorogen binding tags, Nanoscale, 11(8), 3626-3632.
Akshay Jagatap, Hritik Jain, Simran Purokayastha, Devarajan Sridharan, (2021), Neurally-constrained modeling of human gaze strategies in a change blindness task, PLoS Computational Biology, (In press)
Basu D., Sendhilnathan N., Murthy A., (2021), Neural mechanisms underlying the temporal control of sequential saccade planning in the frontal eye field., Proc Natl Acad Sci U S A., (accepted)
Kedia, S., and Nair, D., (2020), Nanoscale rearrangement of APP organization as a therapeutic target for Alzheimer’s disease, Medical Hypothesis, 143, 110143.
Marathe, P., Mahadeva Swamy, H.S., Nair, D, Bhattacharya, D., (2020), mEosBrite are bright variants of mEos3.2 developed by semirational protein engineering, Journal of Fluorescence, 30(3), 703–715.
Venkatesan, S., Subramaniam, S., Rajeev, P., Chopra, Y., Jose, M., and Nair, D., (2020), Differential scaling of synaptic molecules within functional zones of an excitatory synapse during homeostatic plasticity, eNeuro, 7(2).
Kedia, S., Ramakrishna, P., Netrakanti, P.R., Jose, M., Sibarita, J.-B., Nadkarni, S., and Nair, D., (2020), Real-time Nanoscale Organization of Amyloid Precursor Protein, Nanoscale, 12(15), 8200-8215.
Koltun, B., Ironi, S., Gershoni-Emek, N., Barrera, I., Hleihil, M., Nanguneri, S., Sasmal, R., Agasti, S.S., Nair, D., and Rosenblum, K., (2020), Measuring mRNA translation in neuronal processes and somata by tRNA-FRET, Nucleic Acids Research, 48, e32-e32.
Venkatachalapathy, M., Belapurkar, V., Jose, M., Gautier, A., and Nair, D. , (2019), Live cell super resolution imaging by radial fluctuations using fluorogen binding tags, Nanoscale, 11(8), 3626-3632.
Nanguneri, S., Pramod, R., Efimova, N., Das, D., Jose, M., Svitkina, T., and Nair, D., (2019), Characterization of nanoscale organization of F-actin in morphologically distinct dendritic spines in vitro using supervised learning, eNeuro, 6(4).
Kommaddi, R.P., Tomar, D.S., Karunakaran, S., Bapat, D., Nanguneri, S., Ray, A., Schneider, B.L., Nair, D., and Ravindranath, V., (2019), Glutaredoxin1 Diminishes Amyloid Beta-Mediated Oxidation of F-Actin and Reverses Cognitive Deficits in an Alzheimer’s Disease Mouse Model, Antioxidants & Redox Signaling, 31(18), 1321-1338.
Kommaddi, R.P., Das, D., Karunakaran, S., Nanguneri, S., Bapat, D., Ray, A., Shaw, E., Bennett, D.A., Nair, D., and Ravindranath, V. , (2018), Aβ mediates F-actin disassembly in dendritic spines leading to cognitive deficits in Alzheimer’s disease, Journal of Neuroscience, 38, 1085-1099.
Harper, C.B., Papadopulos, A., Martin, S., Matthews, D.R., Morgan, G.P., Nguyen, T.H., Wang, T., Nair, D., Choquet, D., and Meunier, F.A. , (2016), Botulinum neurotoxin type-A enters a non-recycling pool of synaptic vesicles, Scientific reports, 6(1), 1-13.
Jose, M., Tollis, S., Nair, D., Mitteau, R., Velours, C., Massoni-Laporte, A., Royou, A., Sibarita, J.-B., and McCusker, D., (2015), A quantitative imaging-based screen reveals the exocyst as a network hub connecting endocytosis and exocytosis, Molecular biology of the cell, 26, 2519-2534.
Widera, D., Klenke, C., Nair, D., Heidbreder, M., Malkusch, S., Sibarita, J.-B., Choquet, D., Kaltschmidt, B., Heilemann, M., and Kaltschmidt, C., (2016), Single-particle tracking uncovers dynamics of glutamate-induced retrograde transport of NF-κB p65 in living neurons, Neurophotonics, 3, 041804.
Chazeau, A., Mehidi, A., Nair, D., Gautier, J.J., Leduc, C., Chamma, I., Kage, F., Kechkar, A., Thoumine, O., and Rottner, K. , (2014), Nanoscale segregation of actin nucleation and elongation factors determines dendritic spine protrusion, The EMBO journal, 33(23), 2745-2764.
Fraisier, V., Kasri, A., Miserey-Lenkei, S., Sibarita, J.-B., Nair, D., Mayeux, A., Bardin, S., Toyoda, Y., Poser, I., and Poznyakovskiy, A. , (2013), C11ORF24 is a novel type I membrane protein that cycles between the Golgi apparatus and the plasma membrane in Rab6-positive vesicles, PloS one, 8(12), e82223.
Nair, D., Hosy, E., Petersen, J.D., Constals, A., Giannone, G., Choquet, D., and Sibarita, J.-B., (2013), Super-resolution imaging reveals that AMPA receptors inside synapses are dynamically organized in nanodomains regulated by PSD95, Journal of Neuroscience, 33(32), 13204-13224.
Kechkar, A., Nair, D., Heilemann, M., Choquet, D., and Sibarita, J.-B., (2013), Real-time analysis and visualization for single-molecule based super-resolution microscopy, PLoS One, 8(4), e62918.
Jose, M., Tollis, S., Nair, D., Sibarita, J.-B., and McCusker, D., (2013), Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism, Journal of Cell Biology, 200(4), 407- 418.
Rossier, O., Octeau, V., Sibarita, J.-B., Leduc, C., Tessier, B., Nair, D., Gatterdam, V., Destaing, O., Albiges-Rizo, C., and Tampé, R., (2012), Integrins β 1 and β 3 exhibit distinct dynamic nanoscale organizations inside focal adhesions, Nature cell biology, 14(10), 1057-1067.
Hoze, N., Nair, D., Hosy, E., Sieben, C., Manley, S., Herrmann, A., Sibarita, J.-B., Choquet, D., and Holcman, D., (2012), Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging, Proceedings of the National Academy of Sciences, 109(42), 17052-17057.
Heidbreder, M., Zander, C., Malkusch, S., Widera, D., Kaltschmidt, B., Kaltschmidt, C., Nair, D., Choquet, D., Sibarita, J.-B., and Heilemann, M. , (2012), TNF-α influences the lateral dynamics of TNF receptor I in living cells, Biochimica et Biophysica Acta (BBA)-Molecular Cell Research, 1823, 1984-1989.
Izeddin, I., Boulanger, J., Racine, V., Specht, C.G., Kechkar, A., Nair, D., Triller, A., Choquet, D., Dahan, M., and Sibarita, J.B., (2012), Wavelet analysis for single molecule localization microscopy, Opt Express, 20(3), 2081-2095.
Jose, M., Nair, D.K., Altrock, W.D., Dresbach, T., Gundelfinger, E.D., and Zuschratter, W., (2008), Investigating interactions mediated by the presynaptic protein bassoon in living cells by Foerster’s resonance energy transfer and fluorescence lifetime imaging microscopy, Biophysical journal, 94(4), 1483-1496.
Jose, M., Nair, D.K., Reissner, C., Hartig, R., and Zuschratter, W., (2007), Photophysics of Clomeleon by FLIM: discriminating excited state reactions along neuronal development, Biophysical journal, 92(6), 2237-2254.
Nair, D.K., Jose, M., Kuner, T., Zuschratter, W., and Hartig, R., (2006), FRET-FLIM at nanometer spectral resolution from living cells, Optics express, 14(25), 12217-12229.
Kedia, S., Ramanan, N., Nair, D., (2021), Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons, STAR protocols, 2 (2), 100470
Lankipalli, S., Mahadeva Swamy, H.S., Selvam, D., Samanta, D., Nair, D.,Ramgopal, U. , (2021), Cryptic association of B7-2 molecules and its implication for clustering, Protein Science.
Tanwar,M., Kateriya,S., Nair, D., Jose,M., (2021), Optogenetic modulation of real-time nanoscale dynamics of HCN channels using photoactivated adenylyl cyclases, RSC Chemical Biology, 2, 863-875
Nair, D., Kedia, S., Jose,M., (2021), Does altered probability of real-time diffussional collissions of membrane molecules trigger or delay Alzheimer’s Disease, iScience Notes, 5(3), 2020.
Kedia, S., Ramakrishna, P., Netrakanti, P.R., Singh, N., Sisodia, S.S., Jose, M., Sathish Kumar, Mahadevan, A., Ramanan, N., Nadkarni, S., and Nair, D., (2021), Alteration in synaptic nanoscale organization dictates amyloidogenic processing in Alzheimer’s disease, iScience, , 24(3), 101924
Rungta S.P., Basu D., Sendhilnathan N. and Aditya Murthy., (2021), Preparatory activity links frontal eye field activity with small amplitude motor unit recruitment of neck muscles during gaze planning, J. Neurophysiology
Mandal P, Belapurkar V, Nair D, Ramanan N, (2021), Vinculin-mediated axon growth requires interaction with actin and not talin in mouse neocortical neurons, Cellular and Molecular Life Sciences, 1-20.
Jain M, Das S, Lu PPY, Virmani G, Soman S, Thumu SCR, Gutmann DH, Ramanan N, (2021), SRF is required for maintenance of astrocytes in non-reactive state in the mammalian brain, Eneuro, 8(1).
Sethi P, Virmani G, Gupta K, Thumu SCR, Ramanan N, Marathe S., (2021), Automated morphometric analysis with SMorph software reveals plasticity induced by antidepressant therapy in hippocampal astrocytes, Journal of cell science , 134(12), jcs258430
Meenakshi Prabod Kumar; Suraj Kumar; Balaji Jayaprakash, (2021), In vivo Imaging of Immediate Early Gene expression dynamics segregates neuronal ensemble of memories of dual events, Molecular Brain , 14(1), 1-19.
Murty DVPS, Manikandan K, Kumar WS, Ramesh RG, Purokayastha S, Nagendra B, Abhishek ML, Balakrishnan A, Javali M, Rao NP and Ray S, (2021), Stimulus-induced Gamma rhythms are weaker in human elderly with Mild Cognitive Impairment and Alzheimer’s Disease, Elife, 10, e61666.
Dhawale A.K., Hagiwara A, Bhalla US, Murthy VN, Albeanu DF, (2010), Non-redundant odor coding by sister mitral cells revealed by light addressable glomeruli in the mouse, Nature Neuroscience, 13(11), 1404-1412.
Modi M., Dhawale A.K., Bhalla U.S., (2014), CA1 cell activity sequences emerge after reorganization of network correlation structure during associative learning, ELife, 3, e01982.
Kawai R., Markman T., Poddar R., Ko R., Fantana A.L., Dhawale A.K., Kampff A.R., Ölveczky B.P., (2015), Motor cortex is required for learning but not for executing a motor skill, Neuron, 86(3), 800-812.
Dhawale A.K., Smith M.A., Ölveczky B.P., (2017), The role of variability in motor learning, Annual Review of Neuroscience, 40, 479-498.
Dhawale A.K., Miyamoto Y.R., Smith M.A., Ölveczky B.P., (2019), Adaptive regulation of motor variability, Current Biology, 29(21), 3551–3562.
Williams A.H., Poole B., Mahaswaranathan N., Dhawale A.K., Fisher T., Wilson C.D., Brann D.H., Trautmann E., Ryu S., Shusterman R., Rinberg D., Ölveczky B.P., Shenoy K.V., Ganguli S., (2020), Discovering precise temporal patterns in large-scale neural recordings through robust and interpretable time warping, Neuron , 105(2), 246-259.
Dhawale A.K., Wolff S.B.E., Ko R., Ölveczky B.P.,, (2021), The basal ganglia control the detailed kinematics of learned motor skills, Nature Neuroscience, 24, 1256–1269.
Jana Sumitash, Gopal Atul PA. and A. Murthy, (2021), Computational mechanisms mediating inhibitory control of coordinated eye-hand movements, Brain Sciences, 11(5), 607
Varsha V., Aditya Murthy, and Radhakant Padhi, (2021), A stochastic velocity tracking optimal control model with internal feedback for saccadic eye movements, Biomedical Signal Processing and Control, 68,, 102679
Garima Virmani, Priyal D’almeida, Arnab Nandi, Swananda Marathe , (2021), Subfield-specific Effects of Chronic Mild Unpredictable Stress on Hippocampal Astrocytes, European Journal of Neuroscience, April
A Barik, A Sathyamurthy, JH Thompson, M Seltzer, AJ Levine, AT Chesler, (2021), A spinoparabrachial circuit defined by Tacr1 expression drives pain, Elife , 10, e61135.
Prakash SS, Das A, Kanth ST, Mayo JP, Ray S, (2021), Decoding of attentional state using high-frequency local field potential is as accurate as using spikes, Cerebral Cortex
Das A and Ray S, (2021), Effect of cross-orientation normalization on different neural measures in macaque primary visual cortex, Cerebral Cortex Communications, 2(1), tgab009.
Pratima Pandey©, Umer S. Bhat, Anuradha Singh, Aiswarya Joy, Varun Birari, Nagesh Y. Kadam and Kavita Babu©, (2021), Dauer formation in C. elegans is modulated through AWC and ASI dependent chemosensation, Eneuro, 8(2)
Jacob G, Pramod RT, Katti H & Arun SP, (2021), Qualitative similarities and differences in visual object representations between brains and deep networks, Nature Communications, 12(1), 1-14.
Chen G, Padmala S, Chen Y, Taylor PA, Cox RW, and Pessoa L, (2021), To pool or not to pool: Can we ignore cross-trial variability in FMRI?, NeuroImage, 225, 117496.
Limbachia C, Morrow K, Khibovska A, Meyer C, Padmala S, and Pessoa L, (2021), Controllability over stressor decreases responses in key threat-related brain areas, Communications Biology, 4(1), 1-11.
Jana, Sumitash, and Aditya Murthy, (2021), Spatiotemporal coupling between eye and hand trajectories during curved hand movements, Journal of Motor Behavior, 53(1):, 47-58
Sendhilnathan N., Basu D., Goldberg M.E., Schall J.D. and Aditya Murthy, (2021), Neural correlates of goal-directed and non-goal-directed movements, Proceedings of the National Academy of Sciences, 118, (6).
Pratima Pandey*©, Anuradha Singh*, Harjot Kaur, Anindya Ghosh-Roy and Kavita Babu©, (2021), Increased dopaminergic neurotransmission results in ethanol dependent sedative behaviors in Caenorhabditis elegans, PLoS Genetics, 17(2):, e1009346
Nagesh Kadam©, Sukanta Behera, Sandeep Kumar, Anindya Ghosh-Roy and Kavita Babu©, (2021), The G-protein coupled receptor SRX-97 is required for concentration dependent sensing of benzaldehyde in Caenorhabditis elegans, eNeuro, 8(01):, ENEURO.0011-20.2020.
Jacob G & Arun SP, (2020), How the forest interacts with the trees: Multiscale shape integration explains global and local processing, Journal of Vision, 20:, 1-20
KA Zhivago, LS Sneha, Ranjini Garani, Simran Purokayastha, Naren P Rao, Aditya Murthy, Arun SP, (2020), Perceptual priming can increase or decrease with ageing, Frontiers in Aging Neuroscience
Barik A, Lu Y, Sathyamurthy A, Bowman A, Shen C, Li L, Xiong WC, Mei L, (2014), LRP4 is critical for neuromuscular junction maintenance, J Neurosci, 34(42), 13892-905.
Bean JC, Lin TW, Sathyamurthy A, Liu F, Yin DM, Xiong WC, Mei L, (2014), Genetic labeling reveals novel cellular targets of schizophrenia susceptibility gene: distribution of GABA and non-GABA ErbB4-positive cells in adult mouse brain, Journal of Neuroscience, 34(40), 13549-13566.
Yin DM, Sun XD, Bean JC, Lin TW, Sathyamurthy A, Xiong WC, Gao TM, Chen YJ, Mei L, (2013), Regulation of spine formation by ErbB4 in PV-positive interneurons, Journal of Neuroscience, 33(49), 19295-19303.
Yin DM, Chen YJ, Lu YS, Bean JC, Sathyamurthy A, Shen C, Liu X, Lin TW, Smith CA, Xiong WC, Mei L, (2013), Reversal of behavioral deficits and synaptic dysfunction in mice overexpressing neuregulin 1, Neuron, 78(4), 644-657.
Yin DM, Chen YJ, Sathyamurthy A, Xiong WC, (2012), Synaptic dysfunction in schizophrenia, Synaptic Plasticity, 493-516.
Wu H, Barik A, Lu Y, Shen C, Bowman A, Li L, Sathyamurthy A, Lin TW, Xiong WC, Mei L, (2015), Slit2 as a β-catenin/Ctnnb1-dependent retrograde signal for presynaptic differentiation, Elife, 4, e07266.
Sathyamurthy A, Yin DM, Barik A, Shen C, Bean JC, Figueiredo D, She JX, Xiong WC, Mei L, (2015), ERBB3-mediated regulation of Bergmann glia proliferation in cerebellar lamination, Development , 142(3), 522-532.
Yin DM, Chen YJ, Liu S, Jiao H, Shen C, Sathyamurthy A, Lin TW, Xiong WC, Li BM, Mei L, Bergson C, (2015), Calcyon stimulates neuregulin 1 maturation and signaling, Molecular psychiatry, 20, 1251-1260.
Barik A, Li L, Sathyamurthy A, Xiong WC, Mei L, (2016), Schwann Cells in Neuromuscular Junction Formation and Maintenance, Journal of Neuroscience, 36(38), 9770-81
Sun XD, Li L, Liu F, Huang ZH, Bean JC, Jiao HF, Barik A, Kim SM, Wu H, Shen C, Tian Y, Lin TW, Bates R, Sathyamurthy A, Chen YJ, Yin DM, Xiong L, Lin HP, Hu JX, Li BM, Gao TM, Xiong WC, Mei L, (2016), Lrp4 in astrocytes modulates glutamatergic transmission, Nature neuroscience, 19(8), 1010-1018
Matson KJE, Sathyamurthy A, Johnson KR, Kelly MC, Kelley MW, Levine AJ, (2018), Isolation of adult spinal cord nuclei for massively parallel single-nucleus RNA sequencing, J Vis Exp, (140)
Sathyamurthy A*, Johnson KR*, Matson KJE, Dobrott CI, Li L, Ryba AR, Bergmann TB, Kelly MC, Kelley MW, Levine AJ, (2018), Massively Parallel Single Nucleus Transcriptional Profiling Defines Spinal Cord Neurons and Their Activity during Behavior, Cell Rep, 22(8):, 2216-2225 (* authors contributed equally).
Dobrott C, Sathyamurthy A, Levine AJ, (2019), Decoding cell type diversity within the spinal cord, Current Opinion in Physiology, 8, 1-6
Zhang H, Sathyamurthy A, Liu F, Li L, Zhang L, Dong Z, Cui W, Sun X, Zhao K, Wang H, Ho HH, Xiong WC, Mei L, (2019), Agrin-Lrp4-Ror2 signaling regulates adult hippocampal neurogenesis in mice, Elife, 8, e45303
Kuravi S, Lan TH, Barik A, Lambert NA , (2010), Third-party bioluminescence resonance energy transfer indicates constitutive association of membrane proteins: application to class a g-protein-coupled receptors and G-proteins, Biophysical Journal , 98(10), 2391-2399.
Wu H, Lu Y, Barik A, Joseph A, Taketo MM, Xiong WC, Mei L, (2012), β-Catenin gain of function in muscles impairs neuromuscular junction formation, Development, 139(13), 2392-2404.
Shen C, Lu Y, Zhang B, Figueiredo D, Bean J, Jung J, Wu H, Barik A, Yin DM, Xiong WC, Mei L, (2013), Antibodies against low-density lipoprotein receptor-related protein 4 induce myasthenia gravis, Journal of Clinical Investigation, 123(12), 5190- 5202.
Barik A*, Lu Y*, Sathyamurthy A, Bowman A, Shen C, Xiong WC, Mei L,, (2014), LRP4 is critical for neuromuscular junction maintenance, Journal of Neuroscience, 34(42), 13892-13905.
Sathyamurthy A, Yin D, Barik A, Shen C, Bean JC, Figueiredo D, She JX, Xiong WC, Mei L, (2015), ERBB3-mediated regulation of Bergmann glia proliferation in cerebellar amination, Development, 142(3), 522-32.
Sun X-D, Li L, Huang Z-H, Bean J.C., Jiao H-F, Barik A, Kim S-M, Liu F, Wu H, Shen C, Tian Y, Lin T.W., Bates R, Sathyamurthy A, Chen Y-J, Yin D-M, Xiong L, Lin H-P, Hu J-X, Li B-M, Gao T-M, Xiong W-C, Mei L,, (2016), Lrp4 in astrocytes modulates glutamatergic transmission, Nature Neuroscience, 19, 1010–1018.
Barik A*, Li L*, Sathyamurthy A, Figueredo D, Xiong WC, Mei L, (2016), Schwann cells in neuromuscular junction formation and maintenance, Journal of Neuroscience, 36(38), 9770-9781.
Li L, Cao Yu, Wu H, Ye X, Shen C, Barik A, Xie X, Gan L, Xiong W-C, Mei L, (2016), Enzymatic Activity of the Scaffold Protein Rapsyn for Synapse Formation, Neuron, 92(5), 1007-1019.
Ghitani N*, Barik A*, Szczot M*, Thompson J, Li C, Le Pichon C, Krashes M, Chesler A, (2017), Specialized mechanosensory nociceptors mediating rapid responses to hair pull, Neuron, 95, 944-954.
Lin, T. W., Tan, Z., Barik, A., Yin, D. M., Brudvik, E., Wang, H., ... & Mei, L, (2018), Regulation of synapse development by Vgat deletion from ErbB4-positive interneurons, Journal of Neuroscience, 38(10), 2533-2550.
Szczot, M., Liljencrantz, J., Ghitani, N., Barik, A., Lam, R., Thompson, J. H., ... & Foley, A. R, (2018), PIEZO2 mediates injury-induced tactile pain in mice and humans, Science translational medicine, 10(462).
Barik A, Thompson J, Seltzer M, Ghitani N, Chesler A, (2018), A brainstem-spinal circuit controlling nocifensive behavior, Neuron, 100(6), 1491-1503.
Kozlitina J, Risso D, Lansu K, Olsen RHJ, Sainz E, Luiselli D, Barik A, Frigerio-Domingues C, Pagani L, Wooding S, Kirchner T, Niaura R, Roth B, Drayna D, (2019), An African-specific haplotype in MRGPRX4 is associated with menthol cigarette smoking, PLoS Genetics, 15(2), e1007916
Solinski HR, Kriegbaum MC, Tseng PY, Earnest TW, Sainz E, Gu X, Barik A, Chesler AT, Hoon MA, (2019), Nppb Neurons Are Sensors of Mast Cell-Induced Itch, Cell Reports, 26(13), 3561-3573.
Sathyamurthy A, Barik A, Dobrott CI, Matson KJE, Stoica S, Pursley R, Chesler A, Levine AJ, (2020), Direct Cerebellospinal Pathways Regulate Motor Performance and Motor Learning, Cell Reports, 31(6), 107595
Mani S*, Radhakrishnan S, Cheramangalam RN, Shalini H, Rajendran S and Ramanan N*, (2020), Shh mediated increase in β-catenin levels maintains cerebellar granule neuron progenitors in proliferation, Cerebellum , 19, 645–664.
Pramod RT & Arun SP , (2020), Improving Machine Vision using Human Perceptual Representations: The Case of Planar Reflection Symmetry for Object Classification, IEEE Transactions in Pattern Analysis and Machine Intelligence
Sendnilnathan N., Basu D. and A. Murthy., (2020), Assessing within-trial and across-trial neural variability in macaque frontal eye fields and their relation to behavior, Eur. Journal of Neuroscience
Vikram Pal Singh, Aditya Singh and Balaji Jayaprakash., (2019), Estimating the Limiting Speed of Acquisition in Next Generation In-vivo Imaging at Mesoscales, iScience Notes, 4,Article #4.
Kumar, M, Deshmukh, SS, (2020), Differential propagation of ripples along the proximodistal and septotemporal axes of dorsal CA1 of rats, Hippocampus, 30(9), 970-986.
Agrawal A, Hari KVS & Arun SP, (2020), A compositional neural code in high-level visual cortex can explain jumbled word reading , eLife, 9:e54846
Dinavahi MVPS, Manikandan K, Kumar WS, Ramesh RG, Purokayastha S, Javali M, Rao NP, Ray S, (2020), Gamma oscillations weaken with age in healthy elderly in human EEG, Neuroimage, 215, 116826
LCL. Portugal, RCS. Alves, .....,S. Padmala, G. Chen, L. Pessoa, and MG. Pereira , (2020), Interactions between emotion and action in the brain, NeuroImage, 214, 116728.
Ray S†, Jouny CC, Crone NE, Boatman D, Thakor NV, Franaszczuk PJ, (2003), Human ECoG analysis during speech perception using matching pursuit: a comparison between stochastic and dyadic dictionaries, IEEE Transactions in Biomedical Engineering, 50(12), 1371-1373
Muniak MA, Ray S, Hsiao SS, Dammann JF, Bensmaia SJ†, (2007), The neural coding of stimulus intensity: linking the population response of mechanoreceptive afferents with psychophysical behavior, Journal of Neuroscience, 27(43), 11687-11699.
Ray S, Niebur E, Hsiao SS, Sinai A and Crone NE†, (2008), High-frequency gamma activity (80-150 Hz) is increased in human cortex during selective attention, Clinical Neurophysiology, 119(1), 116-133.
Ray S†, Hsiao SS, Crone NE, Franaszczuk PJ and Niebur E, (2008), Effect of stimulus intensity on the spike-local field potential relationship in the secondary somatosensory cortex, Journal of Neuroscience, 28(29), 7334-7343.
Ray S†, Crone NE, Niebur E, Franaszczuk PJ and Hsiao SS, (2008), Neural correlates of high-gamma oscillations (60-200 Hz) in macaque local field potentials and their potential implications in electrocorticography, Journal of Neuroscience, 28(45), 11526-11536.
Salelkar S and Ray S, (2020), Interaction between steady-state visually evoked potentials at nearby flicker frequencies, Scientific Reports, 10, 5344
Dubey A and Ray S, (2020), Comparison of tuning properties of gamma and high-gamma power in local field potential (LFP) versus electrocorticogram (ECoG) in visual cortex, Scientific Reports, 10, 5422
Kanth ST and Ray S, (2020), Electrocorticogram (ECoG) is highly informative in primate visual cortex, Journal of Neuroscience, 40(12), 2430-2444
Ajmera, S., Jain, H., Sundaresan, M. and Sridharan, D, (2020), Decoding task-specific cognitive states with slow, directed functional networks in the human brain, eNeuro, (in press)
*Ajmera, S., Rajagopal, S., Rehman, R. and Sridharan, D., (2019), Infra-slow brain dynamics as a marker for cognitive function and decline, Advances in Neural Information Processing Systems, (pp. 6947-6958)
Ashwani Bhardwaj*, Pratima Pandey* and Kavita Babu, (2020), Control of locomotory behavior of Caenorhabditis elegans by the immunoglobulin superfamily protein RIG-3, Genetics, 214(1):, 135-45
Basu Debaleena and A. Murthy, (2020), Parallel programming of saccades in the macaque frontal eye field: are sequential motor plans co-activated?, Journal of Neurophysiology, 123(1):, 107-119
Vina Tikiyani© and Kavita Babu©, (2019), Claudins in the brain: Unconventional functions in neurons, Traffic, 20(11):, 807-14
Agrawal A, Hari KVS & Arun SP, (2019), Reading Increases the Compositionality of Visual Word Representations, Psychological Science , 30:, 1707-1723
*Sreenivasan, V. and Sridharan, D., (2019), Subcortical connectivity correlates selectively with attention’s effects on spatial choice bias, Proceedings of the National Academy of Sciences, 116(39), 19711-19716
Yogesh Dahiya©, Saloni Rose, Shruti Thapliyal, Shivam Bhardwaj, Maruthi Prasad and Kavita Babu©, (2019), Differential regulation of innate and learned behavior by CREB1/CRH-1 in Caenorabditis elegans, The Journal of Neuroscience, 39(40): , 7934-46
Kavita Babu© and Sandhya P Koushika©, (2019), Sydney Brenner (1927-2019), Current Science, 16(12):, 2106-09
Banerjee, S., Grover, S., Ganesh, S. and Sridharan, D*. , (2019), Sensory and decisional components of endogenous attention are dissociable, Journal of neurophysiology, 122(4), 1538-1554
Zhitao Hu*, Edward C.G. Pym*, Kavita Babu*, Amy B. Vahlishan Murray*, and Joshua M. Kaplan, (2011), A neuropeptide-mediated stretch response links muscle contraction to changes in neurotransmitter release, Neuron 2011, 71(1), 92-102.
Kavita Babu, Zhitao Hu, Shih-Chieh Chien, Gian Garriga and Joshua M. Kaplan, (2011), The Immunoglobulin super family protein RIG-3 prevents synaptic potentiation and regulates Wnt signaling, Neuron, 71(1), 103-116.
Pratima Pandey, Ashwani Bhardwaj and Kavita Babu, (2017), Regulation of WNT Signaling at the Neuromuscular Junction by the Immunoglobulin Super-Family Protein RIG-3 in Caenorhabditis elegans, Genetics, 206(3), 1521-1534.
Shruti Thapliyal, Amruta Vasudevan*, Yongming Dong*, Jihong Bai, Sandhya P. Koushika and Kavita Babu, (2018), The C-terminal of CASY-1/Calsyntenin regulates GABAergic synaptic transmission at the Caenorhabditis elegans neuromuscular junction, PLoS Genetics, 14(3):, e1007236
Shruti Thapliyal, Shruthi Ravindranath and Kavita Babu, (2018), Regulation of glutamate signaling in the sensorimotor circuit by CASY-1A/Calsyntenin in Caenorhabditis elegans, Genetics, 208(4): , 1553-64
Ashwani Bhardwaj*, Saurabh Thapliyal*, Yogesh Dahiya and Kavita Babu, (2018), FLP-18 functions through the G-protein coupled receptors NPR-1 and NPR-4 to modulate reversal length in Caenorhabditis elegans, The Journal of Neuroscience , 38(20): , 4641-54
Pallavi Sharma*, Lei Li*, Haowen Liu, Vina Tikiyani, Zhitao Hu© and Kavita Babu©, (2018), The Claudin-like protein, HPO-30, is required to maintain LAChRs at the Caenorhabditis elegans neuromuscular junction, The Journal of Neuroscience, 38(32): , 7072-87
Shruti Thapliyal and Kavita Babu, (2018), Pentylenetetrazole (PTZ)-induced Convulsion Assay to Determine GABAergic Defects in Caenorhabditis elegans, Bio-protocol, 8(17): , e2989
Vina Tikiyani, Lei Li, Pallavi Sharma, Haowen Liu, Zhitao Hu and Kavita Babu, (2018), Wnt secretion is regulated by the tetraspan protein HIC-1 through its interaction with Neurabin/NAB-1, Cell Reports , 25(7): , 1856-71
Raunaq Deo*, Manish S. Kushwah*, Sukrut C. Kamerkar, Nagesh Y. Kadam, Srishti Dar, Kavita Babu, Anand Srivastava and Thomas J. Pucadyil, (2018), ATP-dependent membrane remodeling links EHD1 functions to endocytic recycling, Nature Communications, 9(1): , 5187
Shruti Thapliyal© and Kavita Babu©, (2019), C. elegans Locomotion: Finding Balance in Imbalance, Advances in Experimental Medicine and Biology, 1112:, 185-96
Puneet Singh, Ketan Jhunjhunwala, Albert Stezin, Abhishek Lenka, Pramod Kumar Pal, Ashitava Ghosal, Aditya Murthy, (2019), Basal ganglia contributions during the learning of a visuomotor rotation: effect of dopamine, deep brain stimulation and reinforcement, European Journal of Neuroscience, 50(8):, 3349-3364
Katti H & Arun SP, (2019), Are you from North or South India? A hard face classification task reveals systematic representational differences between humans and machines, Journal of Vision, 19(7), 1-1
Sagar, V., Sengupta, R., & Sridharan, D*., (2019), Exogenous attention facilitates performance through dissociable sensitivity and bias mechanisms, Scientific Reports, 9(1), 1-13
Katti H, Peleen MV and Arun SP, (2019), Machine vision benefits from human contextual expectations, Scientific Reports, 9:, 2112
Biswas A and Ray S, (2019), Alpha neurofeedback has a positive effect for participants who are unable to sustain their alpha activity, eNeuro, 6(4)
Verbruggen, F., Aron, A. R., Band, G. P., Beste, C., Bissett, P. G., Brockett, A. T.,… Murthy, A., … Boehler, C. N., (2019), A consensus guide to capturing the ability to inhibit actions and impulsive behaviors in the stop-signal task., ELife, 8, e46323
Padmala S, Sambuco N and Pessoa L, (2019), Interactions between reward motivation and emotional processing, Progress in Brain Research, 247, 1-21.
J. Engelmann, E. Damaraju, S. Padmala, and L. Pessoa, (2009), Combined effects of attention and motivation on visual task performance: Transient and sustained motivational effects, Frontiers in Human Neuroscience, 3, 4.
S-L. Lim, S. Padmala and L. Pessoa, (2009), Segregating the significant from the mundane on a moment-to-moment basis via direct and indirect amygdala contributions, Proceedings of the National Academy of Sciences, 106(39), 16841-16846.
S. Padmala and L. Pessoa, (2010), Interactions between cognition and motivation during response inhibition, Neuropsychologia, 48(2), 558-565.
S. Padmala and L. Pessoa, (2010), Moment-to-moment fluctuations in fMRI amplitude and inter-region coupling are predictive of inhibitory performance, Cognitive, Affective, and Behavioral Neuroscience, 10(2), 279-297.
S. Padmala, S-L. Lim and L. Pessoa, (2010), Pulvinar and affective significance: responses track moment-to-moment stimulus visibility, Frontiers in Human Neuroscience, 4, 64.
S. Padmala and L. Pessoa, (2011), Reward reduces conflict by enhancing attentional control and biasing visual cortical processing, Journal of Cognitive Neuroscience , 23(11), 3419-3432.
S. Padmala, A. Bauer and L. Pessoa, (2011), Negative emotion impairs conflict-driven executive control, Frontiers in Psychology , 2, 192.
K. Hu, A. Bauer, S. Padmala and L. Pessoa, (2012), Threat of bodily harm has opposing effects on cognition, Emotion , 12(1), 28-32.
J-M Choi, S. Padmala and L. Pessoa, (2012), Impact of state anxiety on the interaction between threat monitoring and cognition, Neuroimage , 59(2), 1912-1923.
L. Pessoa, S. Padmala, A. Kenzer and A. Bauer, (2012), Interactions between cognition and emotion during response inhibition, Emotion , 12(1), 192-197.
J. Kinnison, S. Padmala, J-M Choi and L. Pessoa, (2012), Network analysis reveals increased integration during emotional and motivational processing, The Journal of Neuroscience, 32(24), 8361-8372.
K. Hu*, S. Padmala* and L. Pessoa, (2013), Interactions between reward and threat during visual processing, Neuropsychologia , 51(9), 1763-1772.
J-M Choi*, S. Padmala*, P. Spechler and L. Pessoa, (2014), Pervasive competition between threat and reward in the brain, Social Cognitive and Affective Neuroscience, 9(6), 737-750.
G. Bissonette, R. Gentry, S. Padmala, L. Pessoa and M. Roesch, (2014), Impact of appetitive and aversive outcomes on brain responses: linking the animal and human literatures, Frontiers in Systems Neuroscience, 8, 24.
S. Padmala and L. Pessoa, (2014), Motivation versus aversive processing during perception, Emotion, 14(3), 450-454.
B. McMenamin, S. Langeslag, M. Sirbu, S. Padmala and L. Pessoa, (2014), Network organization unfolds over time during periods of anxious anticipation, The Journal of Neuroscience, 34(34), 11261-11273.
L-R Dougherty, S-L Blankenship, P-A Spechler, S. Padmala and L.Pesso, (2015), An fMRI Study of Cognitive Reappraisal in Children: Divergent Effects on Brain and Behavior, Journal of Psychopathology and Behavioral Assessment, 37, 634-644.
J-M Choi*, S. Padmala* and L. Pessoa, (2015), Counteracting effect of threat on reward enhancements during working memory, Cognition and Emotion, 29, 1517-1526.
Yokoyama T*, S. Padmala* and L. Pessoa, (2015), Reward learning and negative emotion during rapid attentional competition, Frontiers in Psychology, 6, 269.
C. Sours, J. Kinnison, S. Padmala, R-P. Gullapalli and L. Pessoa, (2018), Altered segregation between task-positive and task-negative regions in mild traumatic brain injury, Brain Imaging and Behavior, 12(3), 697-709.
S. Padmala, M. Sirbu and L. Pessoa, (2017), Potential reward reduces the adverse impact of negative distractor stimuli, Social Cognitive and Affective Neuroscience, 12, 1402-1413.
S. Padmala*, N. Sambuco*, M. Codispoti and L. Pessoa., (2018), Attentional capture by simultaneous pleasant and unpleasant emotional distractors, Emotion, 18(8), 1189-1194.
C-T Meyer*, S. Padmala* and L. Pessoa, (2019), Dynamic threat processing, Journal of Cognitive Neuroscience, 31(4), 522-542.
Dubey A and Ray S, (2019), Cortical electrocorticogram (ECoG) is a local signal, Journal of Neuroscience, 39(22), 4299-4311
Prabaha Gangopadhyay and Jhilik Das, (2019), Do Primates and Deep Artificial Neural Networks Perform Object Categorization in a Similar Manner?, Journal of Neuroscience, 39(6):, 946-948;
Sharath Umesh,Shweta Pant,Srivani Padmaa, Sumitash Jana, Varsha Vasudevan, Aditya Murthy, Sundarrajan Asokan , (2019), A novel Fibre-Bragg grating system for eye tracking, Journal of Advanced Research, 16: , 24-34
Kumar, S., Sreenivasan. V., Talukdar, P., Pestilli, F., Sridharan, D*., (2019), ReAl-LiFE: Accelerating the discovery of individualized brain connectomes on GPUs, In proceedings of the 33rd AAAI Conference on Artificial Intelligence, 33(1), , 630-638
Kundu, J. N., Srinivas, R., Babu, V. R., Sridharan, D*., (2017), A biologically-inspired sparse, topographic recurrent neural network model for robust change detection, NIPS workshop on Cognitively Informed Artificial Intelligence (CIAI), Oral spotlight presentation
Sundaresan, M., Nabeel, A., & Sridharan, D*., (2017), Mapping distinct timescales of functional interactions among brain networks, In Advances in Neural Information Processing Systems, (pp. 4109-4118)
Sridharan, D*., Steinmetz, N. A., Moore, T., & Knudsen, E. I., (2017), Does the superior colliculus control perceptual sensitivity or choice bias during attention? Evidence from a multialternative decision framework, Journal of Neuroscience, 37(3), 480-511
Knudsen, E. I., Schwarz, J. S., Knudsen, P. F., & Sridharan, D*. , (2017), Space-Specific Deficits in Visual Orientation Discrimination Caused by Lesions in the Midbrain Stimulus Selection Network, Current Biology, 27(14), 2053-2064
Sartorel E, Ünlü C, Jose M, Massoni-Laporte A, Meca J, Sibarita JB, McCusker D, (2018), Phosphatidylserine and GTPase activation control Cdc42 nanoclustering to counter dissipative diffusion, Molecular Biology of the Cell, 29(11), 1299-1310
Ahmad F, Das D, Kommaddi RP, Diwakar L, Gowaikar R, Rupanagudi KV, Bennett DA, Ravindranath V, (2018), Isoform-specific hyperactivation of calpain-2 occurs presymptomatically at the synapse in Alzheimer’s disease mice and correlates with memory deficits in human subjects, Scientific Reports, 8:, 13119
Chatterjee A, Chinappa K, Ramanan N, Mani S, (2018), Centrosome inheritance does not regulate cell fate in granule neuron progenitors of the developing cerebellum, Cerebellum, 17, 685-691.
Wang C, Chen X, Lee H, Deshmukh SS, Yoganarasimha D, Savelli F, and Knierim JJ, (2018), Egocentric coding of external items in the lateral entorhinal cortex, Science, 362(6417), 945-949
Marathe S, D'almeida PL, Virmani G, Bathini P, Alberi L, (2018), Effects of Monoamines and Antidepressants on Astrocyte Physiology: Implications for Monoamine Hypothesis of Depression, Journal of Experimental Neuroscience, 23:, 1-7
Das A and Ray S, (2018), Effect of stimulus contrast and visual attention on spike-gamma phase relationship in macaque primary visual cortex, Frontiers in Computational Neuroscience, 12, 66.
Saxena R, Barde W, and Deshmukh SS, (2018), Inexpensive, scalable camera system for tracking rats in large spaces, Journal of Neurophysiology, 120:, 2383–2395
Jana S. and Murthy A, (2018), Task context determines whether common or separate inhibitory signals underlie the control of eye-hand movements., Journal of Neurophysiology , 120:, 1695-1711
Venkataratamani PV and Murthy A, (2018), Distinct mechanisms explain the control of reach speed planning: evidence from a race model framework, Journal of Neurophysiology, 120:, 1293-1306
Salelkar S, Somasekhar GM, and Ray S, (2018), Distinct frequency bands in the local field potential are differently tuned to stimulus drift rate, Journal of Neurophysiology, 120:, 681-692
Sharath Umesh, Shweta Pant, Srivani Padma Goggi, Sundarrajan Asokan, Sumitash Jana, Varsha Vasudevan and Murthy A., (2018), Method and device for tracking eye movement of a subject, Indian Provisional Patent, 201841002316
Ratan Murty NA & Arun SP, (2018), Multiplicative mixing of object identity and image attributes in single inferior temporal neurons., PNAS, 115:, E3276-85
Shirhatti V and Ray S, (2018), Long wavelength (Reddish) hues induce unusually large gamma oscillations in the primate primary visual cortex, PNAS, 115, 4489-94
Dinavahi MVPS*, Shirhatti V*, Ravishankar P* and Ray S, (2018), Large visual stimuli induce two distinct gamma oscillations in primate visual cortex, Journal of Neuroscience, 38, 2730-44
Kommaddi RP, Das D, Karunakaran S, Nanguneri S, Bapat D, Ray A, Shaw E, Bennett DA, Nair D, Ravindranath V, (2018), Aβ mediates F-actin disassembly in dendritic spines leading to cognitive deficits in Alzheimer’s disease, J Neuroscience, 38, 1085–1099.
Pramod RT & Arun SP, (2018), Symmetric objects become special in perception due to generic computations in neurons, Psychological Science, 29:95-109
Subhash Chandran KS, Seelamantula CS, and Ray S, (2018), Duration Analysis Using Matching Pursuit Algorithm Reveals Longer Bouts of Gamma Rhythm, Journal of Neurophysiology, 119(3), 808-821
Biswas A and Ray S, (2017), Control of alpha rhythm (8-13 Hz) using neurofeedback, Journal of the Indian Institute of Science, 97:4, 527-531
Venkataratamani PV, Gopal Atul PA, Murthy A., (2018), An independent race model involving an abort and re-plan strategy explains reach redirecting movements during planning and execution, European Journal of Neuroscience, 47:, 460-478
Jana Sumitash, Gopal Atul PA. and Murthy A., (2017), A Computational Framework for Understanding Eye–Hand Coordination, J. Indian Inst. Sci., 97(4): , 543–554
Banerjee, S., Grover, S., & Sridharan, D*., (2017), Unraveling Causal Mechanisms of Top-Down and Bottom-Up Visuospatial Attention with Non-invasive Brain Stimulation, Journal of the Indian Institute of Science, 97 (4), 451-475
P Meenakshi and J Balaji, (2017), Neural Circuits of Memory Consolidation and Generalisation, Journal of the Indian Institute of Science, 97, 487–495
Varsha V, Radhakant Padhi, Murthy A, (2017), A Stochastic Feedback Model to Simulate Saccadic Eye Movement Variability, IFAC-PapersOnLine, Volume 50, Issue 1,, 13521-13525
Singh A and J Balaji , (2017), Sensitive Estimation of Flavor Preferences in STFP Using Cumulative Time Profiles, Bio-protocol, Vol 7
Jain D, Jakhalekar IR, Deshmukh SS, (2017), Navigational strategies and their neural correlates, Journal of the Indian Institute of Science, 97 (4), 511-525
Donlea JN, Ramanan N, Silverman N and Shaw PJ , (2014), Genetic rescue of functional senescence in synaptic and behavioral plasticity, Sleep, 37, 1427-1437.
Lee H, Wang C, Deshmukh SS, Knierim JJ, (2015), Neuronal population evidence of functional heterogeneity along the CA3 transverse axis: pattern completion versus pattern separation, Neuron, 87(5):, 1093-105
Ravindranath V, Dang HM, Goya RG, Mansour H, Nimgaonkar VL, Russell VA, Xin Y, (2015), Regional research priorities in brain and nervous system disorders, Nature, 527(7578), S198-S206.
Ravindranath, V. and Strobel H.W., (2013), Cytochrome P450-mediated metabolism in brain: functional roles and their implications, Expert Opin Drug Metab Toxicol, 9(5), 551-558.
Karunakaran S, Ravindranath V., (2009), Activation of p38 MAPK in the substantia nigra leads to nuclear translocation of NF-kappaB in MPTP-treated mice: implication in Parkinson’s disease, J Neurochem. , 109(6), 1791-1799.
Saeed U, Karunakaran S, Meka DP, Koumar RC, Ramakrishnan S, Joshi SD, Nidadavolu P, Ravindranath V., (2009), Redox activated MAP kinase death signaling cascade initiated by ASK1 is not activated in female mice following MPTP: novel mechanism of neuroprotection, Neurotox Res., 16(2), 116-126
Alcino J Silva, Yu Zhou, Thomas Rogerson, Justin Shobe, J Balaji, (2009), Molecular and cellular approaches to memory allocation in neural circuits, Science, 326(5951), 391-395.
Yu Zhou, Jaejoon Won, Mikael Guzman Karlsson, Miou Zhou, Thomas Rogerson, Jayaprakash Balaji, Rachael Neve, Panayiota Poirazi, Alcino J Silva, (2009), CREB regulates excitability and the allocation of memory to subsets of neurons in the amygdala, Nature neuroscience, 12(11), 1438-1443.
K.M. Sharika, Supriya Ray and Murthy A., (2009), Attention for Action during Error Correction, Progress in Brain Research, 176, 227-244.
Murthy A, Ray S, Shorter SM, Schall JD,Thompson KG, (2009), Neural Control of Visual Search by Frontal Eye Field: Effects of Unexpected Target Displacement on Visual Selection and Saccade Preparation, J. Neurophysiology, 101(5), 2485-2507.
Feger BJ, Thompson JW, Dubois LG, Kommaddi RP, Foster MW, Mishra R, Shenoy SK, Shibata Y, Kidane YH, Moseley MA, Carnell LS, Bowles DE., (2016), Microgravity induces proteomics changes involved in endoplasmic reticulum stress and mitochondrial protection, Sci. Rep., 6:34091
Ahmad F, Singh K, Das D, Gowaikar R, Shaw E, Ramachandran A, Rupanagudi KV, Kommaddi RP, Bennett DA, Ravindranath V, (2017), Reactive Oxygen Species-Mediated Loss of Synaptic Akt1 Signaling Leads to Deficient Activity-Dependent Protein Translation Early in Alzheimer’s Disease, Antioxid Redox Signal, 27(16):1269-1280
Jean-Charles PY, Yu SM, Abraham D, Kommaddi RP, Mao L, Strachan RT, Zhang ZS, Bowles DE, Brian L, Stiber JA, Jones SN, Koch WJ, Rockman HA, Shenoy SK, (2017), Mdm2 regulates cardiac contractility by inhibiting GRK2-mediated desensitization of β-adrenergic receptor signaling, JCI Insight, 2(17);pii: 95998
Katti H, Peelen MV & Arun SP, (2017), How do targets, nontargets and context influence real-world object detection?, Attention Perception and Psychophysics
Goddard CA, Sridharan D*, Huguenard JR, Knudsen EI, (2012), Gamma oscillations are generated locally in an attention-related midbrain network, Neuron, 73(3), 567-580
Sridharan D*, Knudsen EI., (2015), Selective disinhibition: A unified neural mechanism for predictive and post hoc attentional selection, Vision Res, 116, 194-209.
Marathe S, Jaquet M, Annoni J-M and Alberi L, (2017), Jagged1 Is Altered in Alzheimer’s Disease and Regulates Spatial Memory Processing, Frontiers in Cellular Neuroscience
Gopal Atul P. and Murthy A., (2015), Eye-hand coordination during a double-step task: evidence for a common stochastic accumulator, J. Neurophysiology , 114(3), 1438-1454.
Gopal Atul PA, Jana Sumitash and Murthy A., (2017), Contrasting speed accuracy trade-offs for eye and hand movements reveal the optimal nature of saccade kinematics, J. Neurophysiology , 118(3):1664-1676
Sendnilnathan N., Basu D., and Murthy A., (2017), Simultaneous analysis of the LFP and spiking activity reveals essential components of a visuomotor transformation in the frontal eye field, Proc Natl Acad Sci U S A, 114 (24) : 6370-6375
Bhutani N., Sengupta S., Basu D., Prabhu N. and Murthy A., (2017), Parallel activation of prospective motor plans during the planning of sequential saccades, European Journal of Neuroscience, 45 : 631-642
Pouget P, Murthy A, and Stuphorn V., (2017), Cortical control and performance monitoring of interrupting and redirecting movements, Philosophical Transactions of the Royal Soc., (B) 372: 20160201
Singh P., Ghosal A. and Murthy A., (2016), Exploration of joint redundancy but not task space variability facilitates supervised motor learning, Proc. Natl Acad. Sci. (USA), 113(50) : 14414-19
Gopal Atul P. and Murthy A., (2016), A common control signal and a ballistic stage can explain the control of coordinated eye-hand movements., J. Neurophysiology , 115(5): 2470-84
Vaidhiyan N, Sundaresan R & Arun SP , (2017), Neural dissimilarity indices that predict oddball detection in behaviour, IEEE Transactions on Information Theory,
Saykally JN, Hatic H, Keeley KL, Jain S, Ravindranath V, (2016), Citron BA: Withaniasomnifera Extract Protects Model Neurons from In Vitro Traumatic Injury, Cell Transplant, 26(7), 1193–1201.
S Kumar, A Singh, VR Singh, JB George, J Balaji, (2016), Saturation Dynamics Measures Absolute Cross Section and Generates Contrast within a Neuron, Biophysical Journal, 111 (6), , 1328-1336
Ratan Murty NA & Arun SP, (2017), Effect of silhouetting and inversion on view invariance in the monkey inferotemporal cortex, Journal of Neurophysiology
Ratan Murty NA & Arun SP, (2017), A Balanced Comparison of Object Invariances in Monkey IT Neurons, eNeuro, 4(2), e0333-16
Ratan Murty NA & Arun SP, (2017), Seeing a straight line on a curved surface: Decoupling of patterns from surfaces by single IT neurons, Journal of Neurophysiology , 117: , 104-116
Sumitash J, Gopal Atul PA, and Murthy A., (2017), Evidence of common and separate eye and hand accumulators underlying flexible eye-hand coordination, J. Neurophysiology, 117(1) : 348-364
Marathe S, Alberi L , (2014), Monitoring Notch activity in the mouse., In Notch Signaling (pp. 115-129). Humana Press, New York, NY.
Marathe S, Alberi L, (2015), Notch in memories: points to remember, Hippocampus , 25(12), 1481-1488.
Alberi L, Hoey SE, Brai E, Scotti AL, Marathe S , (2013), Notch signaling in the brain: in good and bad times., Ageing Research Reviews
Swananda Marathe, Lavinia Alberi , (2014), Paradoxical effects of notch signaling in response to environmental enrichment during critical period: molecular mechanism underlying cognitive reserve?, AAIC2014,
Brai E*, Marathe S*, Astori S, Ben Fredj N, Perry E, Lamy C, Alberi L , (2015), Notch1 regulates hippocampal plasticity through interaction with the Reelin pathway, glutamatergic transmission and CREB signaling., Frontiers in Cellular Neuroscience, 9, 447.
Husain BF*, Nanavaty I*, Marathe S, Rajendran R, Vaidya VA , (2015), Hippocampal transcriptional and neurogenic changes evoked by combination yohimbine and imipramine treatment, Progress in Neuropsychopharmacology and Biological Psychiatry, 61, 1-9.
Marathe S, Liu S, Brai E, Kaczarowski M, Alberi L , (2015), Notch signaling in response to excitotoxicity induces neurodegeneration via erroneous cell cycle re-entry., Cell Death and Differentiation , 22(11), 1775-1784.
Brai E, Marathe S, Zentilin L, Giacca M, Nimpf J, Kretz R, Scotti A, Alberi L., (2014), Notch1 activity in the olfactory bulb is odour-dependent and contributes to olfactory behavior, European Journal of Neuroscience
I. Nanavaty, S. Marathe, V. Vaidya., (2012), Neurogenic effects of rapid action antidepressants, International journal of developmental neuroscience
. Jhaveri DJ*, Nanavaty I*, Prosper BW, Marathe S, Husain BF, Kernie SG, Bartlett PF, Vaidya VA. , (2014), Opposing effects of α2- and β-adrenergic receptor stimulation on quiescent neural precursor cell activity and adult hippocampal neurogenesis, PLoS One
Jhaveri DJ, Mackay EW, Hamlin AS, Marathe SV, Nandam LS, Vaidya VA, Bartlett PF , (2010), Antidepressants that regulate norepinephrine levels activate stem and progenitor cells in the adult hippocampus via β3-adrenergic receptors, Journal of Neuroscience
Yanpallewar SU*, Fernandes K*, Marathe SV*, Vadodaria KC, Jhaveri D, Rommelfanger K, Ladiwala U, Jha S, Muthig V, Hein L, Bartlett P, Weinshenker D, Vaidya VA, (2010), α2-adrenoceptor blockade accelerates the neurogenic, neurotrophic, and behavioral effects of chronic antidepressant treatment., Journal of Neuroscience
Ray A, Kambali M, Ravindranath V, (2016), Thiol Oxidation by Diamide Leads to Dopaminergic Degeneration and Parkinsonism Phenotype in Mice: A Model for Parkinson’s Disease, Antioxid Redox Signal, 25(5), 252-267.
Ahmad F, Singh K, Das D, Gowaikar R, Shaw E, Ramachandran A, Rupanagudi KV, Kommaddi RP, Bennett DA, Ravindranath V, (2017), Reactive Oxygen Species-Mediated Loss of Synaptic Akt1 Signaling Leads to Deficient Activity-Dependent Protein Translation Early in Alzheimer’s Disease, Antioxid Redox Signal, 27(16), 1269-1280.
A Singh, S Kumar, VP Singh, A Das, J Balaji, (2017), Flavor Dependent Retention of Remote Food Preference Memory, Front. Behav. Neurosci., 11, 7
S Maiti, SK Kaushalya, K Garai, J Balaji, (2010), Fluorescence correlation microscopy with real-time alignment readout, US Patent, 7, 705,987.
Brian J Wiltgen, Miou Zhou, Ying Cai, J Balaji, Mikael Guzman Karlsson, Sherveen N Parivash, Weidong Li, Alcino J Silva, (2010), The hippocampus plays a selective role in the retrieval of detailed contextual memories, Current Biology, 20(15), 1336-1344.
Bidyut Sarkar, Anand Kant Das, Senthil Arumugam, Sanjeev Kumar Kaushalya, Arkarup Bandyopadhyay, Jayaprakash Balaji, Sudipta Maiti, (2012), The dynamics of somatic exocytosis in monoaminergic neurons, Frontiers in physiology, 3, 414.
A Singh, S Kumar, VP Singh, J Balaji, (2013), Optical microscopy methods for understanding learning and memory, CURRENT SCIENCE, 105(11), 1537-1548.
Miou Zhou, Weidong Li, Shan Huang, Juan Song, Ju Young Kim, Xiaoli Tian, Eunchai Kang, Yoshitake Sano, Cindy Liu, J Balaji, Shumin Wu, Yu Zhou, Ying Zhou, Sherveen N Parivash, Dan Ehninger, Lin He, Hongjun Song, Guo-li Ming, Alcino J Silva, (2013), mTOR Inhibition ameliorates cognitive and affective deficits caused by Disc1 knockdown in adult-born dentate granule neurons, Neuron, 77(4), 647-654.
Rafał Czajkowski, Balaji Jayaprakash, Brian Wiltgen, Thomas Rogerson, Mikael C Guzman-Karlsson, Alison L Barth, Joshua T Trachtenberg, Alcino J Silva, (2014), Encoding and storage of spatial information in the retrosplenial cortex, Proceedings of the National Academy of Sciences, 111(23), 8661-8666.
Yong-Seok Lee, Dan Ehninger, Miou Zhou, Jun-Young Oh, Minkyung Kang, Chuljung Kwak, Hyun-Hee Ryu, Delana Butz, Toshiyuki Araki, Ying Cai, J Balaji, Yoshitake Sano, Christine I Nam, Hyong Kyu Kim, Bong-Kiun Kaang, Corinna Burger, Benjamin G Neel, Alcino J Silva, (2014), Mechanism and treatment for learning and memory deficits in mouse models of Noonan syndrome, Nature neuroscience, 17(12), 1736-1743.
HJ Singh, VR Singh, SK Sikdar, B Jayaprakash, A Ghosh, (2016), Circular Differential Two-Photon Luminescence from Helically Arranged Plasmonic Nanoparticles, ACS Photonics, 3 (5), , 863-868
Thomas Rogerson, Balaji Jayaprakash, Denise J Cai, Yoshitake Sano, Yong-Seok Lee, Yu Zhou, Pallavi Bekal, Karl Deisseroth, Alcino J Silva, (2016), Molecular and Cellular Mechanisms for Trapping and Activating Emotional Memories, PloS one, 11 (8), e0161655
Sripati AP & Olson CR, (2010), Global image similarity in monkey inferotemporal cortex predicts human visual search performance, Journal of Neuroscience, 30(4), 1258-1269.
Sripati AP & Olson CR, (2010), Responses to compound objects in monkey inferotemporal cortex: The whole is equal to the sum of discrete parts, Journal of Neuroscience, 30(23), 7948-7960.
Kim SS, Sripati AP & Bensmaia SJ, (2010), Predicting the timing of spikes evoked by tactile stimulation of the hand. Journal of Neurophysiology, Journal of Neurophysiology, 104(3),, 1484-1496.
Arun SP, (2012), Turning visual search time on its head, Vision Research, 74, 86-92.
Vaidhiyan N, Arun SP & Sundaresan R, (2012), Active sequential hypothesis testing with application to a visual search problem, In 2012 IEEE International Symposium on Information Theory Proceedings (pp. 2201-2205). IEEE.
Mohan K & Arun SP, (2012), Similarity relations in visual search predict rapid visual categorization, Journal of Vision, 12(11), 19-19.
Vighneshvel T & Arun SP, (2013), Does linear separability really matter? Complex search is explained by simple search, Journal of Vision, 13(11), 10-10.
Pramod RT & Arun SP, (2014), Features in visual search combine linearly, Journal of Vision, 14(4), 6-6.
Zhivago KA & Arun SP, (2014), Texture discriminability in monkey inferotemporal cortex predicts human texture perception, Journal of Neurophysiology, 112(11), 2745-2755.
Vighneshvel T & Arun SP, (2015), Coding of relative size in monkey inferotemporal cortex, Journal of Neurophysiology, 113:, 2173-2179.
Ratan Murty NA & Arun SP, (2015), Dynamics of 3d view invariance in monkey inferotemporal cortex, Journal of Neurophysiology, 113:, 2180-2194.
Zhivago KA & Arun SP, (2016), Selective IT neurons are selective along many dimensions, Journal of Neurophysiology, 115: 1512-1520
Pramod RT & Arun SP, (2016), Object attributes combine additively in visual search, Journal of Vision, 1-29
Pramod RT & Arun SP, (2016), Do computational models differ systematically from human object perception?, CVPR
Puneeth NC & Arun SP, (2016), A neural substrate for object permanence in monkey inferotemporal cortex, Scientific Reports, 6:30808
Sunder S & Arun SP, (2016), Look before you seek: Preview adds a fixed benefit to all searches, Journal of Vision, 1-17
Deshmukh SS, Yoganarasimha D, Voicu H, Knierim JJ, (2010), Theta modulation in the medial and the lateral entorhinal cortices., Journal of neurophysiology, 104(2), 994-1006.
Deshmukh SS, Knierim JJ, (2011), Representation of non-spatial and spatial information in the lateral entorhinal cortex., Frontiers in behavioral neuroscience, 5, 69.
Deshmukh SS*#, Johnson JL*, Knierim JJ, (2012), Perirhinal cortex represents nonspatial, but not spatial, information in rats foraging in the presence of objects: Comparison with lateral entorhinal cortex., Hippocampus, 22(10), 2045-2058.
Deshmukh SS#, Knierim, JJ, (2013), Influence of local objects on hippocampal representations: landmark vectors and memory., Hippocampus, 23(4), 253-267.
Knierim JJ, Neurnuebel JP, Deshmukh SS, (2014), Functional correlates of the lateral and medial entorhinal cortex: Objects, path integration, and local-global reference frames, Philosophical Transactions of the Royal Society B: Biological Sciences, 69(1635), 20130369.
Deshmukh SS, (2014), Spatial and nonspatial representations in the lateral entorhinal cortex., In: Space, Time and Memory in the Hippocampal Formation, Springer, Vienna, 127-152.
Jose M., Tollis S., Nair D.K., Sibarita J.B., McCusker D, (2013), Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism, J Cell Biol, 200(4): 407-18
Ceni C, Kommaddi RP, Thomas R, Vereker E, Liu X, McPherson PS, Ritter B, Barker PA, (2010), The p75NTR intracellular domain generated by neurotrophin-induced receptor cleavage potentiates Trk signaling, J Cell Sci, 123(Pt13):2299-307. PMID: 20530577
Kommaddi RP, Dickson KM, Barker PA, (2011), Stress-induced expression of the p75neurotrophin receptor is regulated by O-GlcNAcylation of the Sp1 transcription factor, J Neurochem, 116(3):396-405. PMID: 21105874
Kommaddi RP, Thomas R, Ceni C, Daigneault K, Barker PA, (2011), Trk-dependent ADAM17 activation facilitates neurotrophin survival signaling, FASEB J, 25(6):2061-70. PMID: 21411748
Kommaddi RP, Shenoy SK, (2013), Arrestins and protein ubiquitination. Prog Mol Biol Transl Sci, 118:175-204. Review. PubMed PMID: 23764054.
Han SO, Kommaddi RP, Shenoy SK, (2013), Distinct roles for beta-arrestin2 and arrestin-domain-containing proteins in beta2 adrenergic receptor trafficking, EMBO Rep, 14(2):164-71. PMID: 23208550
Kommaddi RP, Jean-Charles PY, Shenoy SK.,, (2015), Phosphorylation of the deubiquitinase USP20 by protein kinase A regulates post-endocytic trafficking of beta2 adrenergic receptors to autophagosomes during physiological stress, J Biol Chem, 290(14):8888-903
Sridharan D, Boahen K, Knudsen EI, (2011), Space coding by gamma oscillations in the barn owl optic tectum, Journal of Neurophysiology, 105(5), 2005-2017.
Sridharan D*, Knudsen EI., (2015), Gamma oscillations in the midbrain spatial attention network: linking circuits to function, Curr Opin Neurobiol, 31, 189-198.
Sridharan D*, Ramamurthy DL, Knudsen EI., (2013), Spatial probability dynamically modulates visual target detection in chickens, Plos One, 8(5), e64136.
Schwarz JS, Sridharan D*, Knudsen EI., (2013), Magnetic tracking of eye position in freely behaving chickens, Frontiers in Systems Neuroscience , 7, 91.
Sridharan D*, Ramamurthy DL, Schwarz JS, Knudsen EI., (2014), Visuospatial selective attention in chickens, Proceedings of the National Academy of Sciences, 111(19), E2056-E2065.
Sridharan D*, Schwarz JS, Knudsen EI., (2014), Selective attention in birds, Current Biology, 24(11), R510-513.
Sridharan D*, Steinmetz NA, Moore T, Knudsen EI., (2014), Distinguishing bias from sensitivity effects in multialternative detection tasks, Journal of Vision , 14(9), 16-16.
Saeed U, Ray A, Valli RK, Kumar AM, Ravindranath V, (2010), DJ-1 Loss by Glutaredoxin But Not Glutathione Depletion Triggers Daxx Translocation and Cell Death, Antioxidants & redox signaling, 13(2), 127-144.
Sehgal N., Gupta, A., Khader Valli, R., Shanker Datt Joshi, Jessica T. Mills, Edith Hamel, Khanna, P., Jain, S. C., Thakur, S.S. and Ravindranath V, (2012), Withania somnifera reverses Alzheimer’s disease pathology by enhancing low-density lipoprotein receptor-related protein in liver, Proc. Natl. Acad. Sci, 109(9), 3510-3515.
Ahmad F, Nidadavolu P, Durgadoss L, Ravindranath V., (2014), Critical cysteines in Akt1 regulate its activity and proteasomal degradation: implications for neurodegenerative diseases, Free Radic Biol Med, 74, 118-128.
Ray A, Sehgal N, Karunakaran S, Rangarajan G, Ravindranath V, (2015), MPTP activates ASK1-p38 MAPK signaling pathway through TNF-dependent Trx1 oxidation in parkinsonism mouse model, Free Radic Biol Med, 87, 312-325.
Li CL, Sathyamurthy A, Oldenborg A, Tank D and Ramanan N , (2014), Glycogen synthase kinase-dependent axon growth is mediated by SRF-dependent transcription in CNS neurons, J Neurosci, 34(11), 4027-4042.
Lu PPY and Ramanan N, (2012), A critical cell-intrinsic role for serum response factor in glial specification in the CNS, J. Neurosci. , 32(23), 8012-8023.
Lin C, Hinde A, Burns CJ, Yin Y, Koppel A, Ma L, Blumenberg M, Khnykin D, Jahnsen FL, Crosby SD, Ramanan N, and Efimova T, (2012), Serum Response Factor controls transcriptional network regulating epidermal function and hair follicle morphogenesis, J. Invest. Dermatol, 133(3), 608-617.
Lu PPY and Ramanan N, (2011), Serum Response Factor is required for cortical axon growth but is dispensable for neurogenesis and neocortical lamination, Journal of Neuroscience, 31(46), 16651-16664.
Johnson AW, Rombag HS, Smith DR and Ramanan N, (2011), Effects of serum response factor (SRF) deletion on conditioned reinforcement, Behavioural brain research, 220(2), 312-318.
Ramakrishnan A, Chokhandre S, Murthy A., (2010), Voluntary control of multi-saccade gaze shifts during movement preparation and execution, J. Neurophysiology, 103(5), 2400-2416.
Ray S and Maunsell JHR., (2010), Differences in gamma frequencies across visual cortex restrict their possible use in computation, Neuron, 67(5), 885-896.
Ray S and Maunsell JHR, (2011), Different origins of gamma rhythm and high-gamma activity in macaque visual cortex, PLoS Biology, 9(4), e1000610.
Ray S and Maunsell JHR, (2011), Network rhythms influence the relationship between spike-triggered local field potential and functional connectivity, Journal of Neuroscience, 31(35), 12674-12682.
Ni AM, Ray S and Maunsell JHR, (2012), Tuned Normalization Explains the Size of Attention Modulations, Neuron, 73(4), 803-813.
Ray S, Ni AM and Maunsell JHR., (2013), Strength of Gamma Rhythm depends on Normalization, PLoS Biology, 11(2), e1001477.
Srinath R and Ray S., (2014), Effect of Amplitude Correlations on Coherence in the Local Field Potential, Journal of Neurophysiology, 112(4), 741-751
Ray S and Maunsell, JHR, (2015), Do gamma oscillations play a role in cerebral cortex?, Trends in Cognitive Sciences, 19(2), 78-85.
Ray S, (2015), Challenges in the quantification and interpretation of spike-LFP relationships, Current Opinion in Neurobiology, 31, 111-118.
Sharika KM, Ramakrishnan, A. and Murthy A., (2014), Use of exocentric and egocentric representations in the concurrent planning of sequential saccades, Journal of Neuroscience , 34(48), 16009-16021.
Subhash Chandran K S, Mishra A, Shirhatti V and Ray S., (2016), Comparison of Matching Pursuit algorithm with other signal processing techniques for computation of the time-frequency power spectrum of brain signals, Journal of Neuroscience, 36(12): 3399-3408
Shirhatti V, Borthakur A, and Ray S, (2016), Effect of Reference Scheme on Power and Phase of the Local Field Potential, Neural Computation, 28(5), 882-913.
Dubey A and Ray S, (2016), Spatial Spread of local field potential is band-pass in the primate visual cortex, Journal of Neurophysiology, 116(4):1986-99
Sharika KM, and Murthy A. , (2015), Contextual modulation during the planning of sequential saccades, Journal of Vision, 15(2), 23-23.
Nelson M.J., Murthy A. and Schall J.D., (2016), Neural control of visual search by frontal eye field: Identification of stages of processing and neural accumulation with a race to threshold., J. Neurophysiology , 115(4):, 1954-69
Gopal Atul PA., Vishwanathan P. and Murthy A., (2015), A common stochastic accumulator with effector-dependent noise can explain eye-hand coordination, Journal of neurophysiology, 113(7), 2033-2048.
Bhutani N, Sureshbabu Ramakrishnan, A. Farooqui A, Behari M, Goyal V, and Murthy A. , (2013), Queuing of concurrent movement plans by basal ganglia, Journal of Neuroscience , 33(24), 9985-9997
Ramakrishnan, A. and Murthy A. , (2013), Brain Mechanisms for decision-making and motor control, Progress in Brain Research, 202, 321-345.
Sharika KM, Neggers SF, Gutteling TP, Van der Stigchel S, Dijkerman HC, Murthy A., (2013), Proactive control of sequential saccades in human supplementary eye field, Proc Natl Acad Sci U S A. , 110(14), 1311-1320.
Bhutani N, Ray S, and Murthy A., (2012), Is saccade averaging determined by visual processing or movement planning?, Journal of neurophysiology, 108(12), 3161-3171.
Ray S., Bhutani N and Murthy A., (2012), Mutual inhibition and capacity sharing during parallel preparation of serial eye movements, Journal of Vision, 12(3), 17-17.
Ramakrishnan, A., Sureshbabu Ramakrishnan and Murthy A., (2012), Understanding how the brain changes its mind: microstimulation in the macaque frontal eye field reveals how saccade plans are changed, Journal of Neuroscience., 32(13), 4457- 4472.
Ray S., Bhutani N., V. Kapoor and Murthy A., (2011), Trans-saccadic integration of visual and motor processing during sequential eye movements, Experimental Brain Research, 215(1), 13-25.
Farooqui AA, Bhutani N, Kulashekhar S, Behari M, Goel V, Murthy A., (2011), Impaired conflict monitoring in Parkinson’s disease patients during an oculomotor redirect task, Exp Brain Res., 208(1), 1-10.